Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g904 ATGGCTATAGCAGCCCCTGGGCAGCTTAATATTAGCGAGTCTCCATCTTGGGGGTCCAGAAGTGTGGATTGTTTTGAGAAATTGGAACAGATTGGTGAAGGCACATATGGTCAAGTGTACATGGCTAGAGAAATCAAAACAGGGGAAATTGTTGCTTTGAAGAAAATACGAATGGACAATGAAAGAGAGGGGTTCCCTATAACCGCCATTCGTGAAATTAAAATTCTAAAGAAGTTGCATCATGAAAATGTGATCAAGTTGAAAGAGATTGTAACTTCTCCAGGTCCTGAGAAGGATGACCAAGGGAGGCCAGATGGTAATAAGTACAAAGGAGGCATCTACATGGTTTTTGAATACATGGACCATGATTTGACTGGTCTTGCTGATCGTCCTGGGATGAGATTTTCAGTCCCTCAGATAAAGTGTTATATGAGGCAGCTTTTGACGGGGCTTCACTACTGTCATGTAAATCAAGTTCTTCATCGGGATATCAAAGGCTCTAATCTTCTAATAGACAATGAGGGAAATTTGAAGCTTGCAGATTTTGGCCTTGCCCGGTCATTTTCAAATGATCACAATGGGAATCTTACAAATCGTGTTATTACCTTATGGTACAGACCGCCAGAGTTGCTGCTTGGGACCACAAGGTATGGTCCAGCTGTTGATATGTGGTCAGTTGGCTGTATCTTTGCAGAACTTCTGCATGGAAAACCTATCTTTCCTGGAAAAGATGAGCCTGAACAATTAAATAAGATCTTTGAGCTTTGTGGAGCTCCAGATGAAGTCAACTGGCCTGGGGTTTCCAAGATTCCTTGGTATAGCAATTTCAAGCCAACAAGGCCAATGAAGAGACGTCTTAGGGAGGTTTTTAGACACTTTGATCGGCATGCTTTGGAGTTATTGGAGAGGATGCTGACTCTTGATCCATCTCAGAGAATATCTGCCAAGGATGCACTTGATGCTGAGTATTTCTGGACTGACCCTTTGCCTTGTGATCCCAAGAGTTTACCAAAATATGAATCTTCCCATGAGTTCCAGACAAAGAAGAAGCGCCAGCAACAACGTCAACATGATGAGACAGCGAAACGTCAGAAGCTTCAGCATCCACAACAGCATGCCCGTCTTCCACCCATTCAGCAGTCCGGGCAAGTACATGCACAGATGCGGGCAGGACCTAACCAGCCCATGCATGGTGGGAGGGGTCCACCATATGCCTCAAGCGGAATGCCTGGTGCAGGTCCTCGAGGAGGTGGCAGTGGTTATGGAGTTGGTGCTCCAAATTATCCTCAAGGTGGTCCATACAGTGGTTCAGGTGCTGGTCGCGGCTCAAACATGATGGGTGGGAACCGCAATCAAAATTATGGTTGGCAACAATAA 1377 45.24 MAIAAPGQLNISESPSWGSRSVDCFEKLEQIGEGTYGQVYMAREIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDDQGRPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNGNLTNRVITLWYRPPELLLGTTRYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYSNFKPTRPMKRRLREVFRHFDRHALELLERMLTLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHDETAKRQKLQHPQQHARLPPIQQSGQVHAQMRAGPNQPMHGGRGPPYASSGMPGAGPRGGGSGYGVGAPNYPQGGPYSGSGAGRGSNMMGGNRNQNYGWQQ* 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13833677 13857982 - Vvi6g904 Vvi6g904 788481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g904 458 MobiDBLite consensus disorder prediction 335 458 - -
Vvi6g904 458 SUPERFAMILY Protein kinase-like (PK-like) 19 332 IPR011009 -
Vvi6g904 458 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Vvi6g904 458 MobiDBLite consensus disorder prediction 373 388 - -
Vvi6g904 458 Gene3D Phosphorylase Kinase; domain 1 12 121 - -
Vvi6g904 458 PANTHER CYCLIN-DEPENDENT KINASE C-2 5 429 - -
Vvi6g904 458 CDD STKc_CDK9_like 25 324 - -
Vvi6g904 458 MobiDBLite consensus disorder prediction 337 366 - -
Vvi6g904 458 PANTHER CELL DIVISION PROTEIN KINASE 5 429 - -
Vvi6g904 458 ProSiteProfiles Protein kinase domain profile. 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g904 458 Gene3D Transferase(Phosphotransferase) domain 1 122 364 - -
Vvi6g904 458 MobiDBLite consensus disorder prediction 442 458 - -
Vvi6g904 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Vvi6g904 458 Pfam Protein kinase domain 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g904 458 SMART serkin_6 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g904 Vvi8g18 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76726 PF00069 Pkinase 1.10E-74 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g904 K08819 - vvi:100263383 829.706