Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g905 ATGGGGAATTGCTGCAGAAGACCTGCTAAATGTGCCCATGCTTCTTCGACTCACTTTTCTGTCCAGTCTGATCGTACAAAGCCTCCCAGTAAGGCAAATAAGGATTCAACTTCTTCCAGCCAGCATACACCTTTTGGAACCTTGAACAAAATTTTGGTATCATCCAAAAGTGATATATCTGCCTCCAATAGTGTCAAGGACTTTAGCTTCAATGATCTCAAGAATGCCTCCAAGAACTTCCGCTCAGAAAGCCTTCTTGGTGAGGGAGGATTTGGGTGTGTTTTCAAAGGCTGGCTTGATGAGAACACTTTAGCTCCCACCAAACCTGGGACGGGGATGGTAGTGGCCATCAAGAAACTCAAGACAGAAAGCTTTCAAGGCCACAAGGAATGGCTTGCGGAAGTAAACTACTTAGGTCAGCTTCACCATGAAAATCTCGTGAAACTCATCGGGTATTGCTCAGAGTCTGAGAATAGACTTCTGGTATATGAGTTTATGTCAAAGGGAAGTTTGGAAAATCATTTATTCAAAAAAGGTGTTCAACCAATAACTTGGGCTACACGGATGAGTATCGCTATTGATGTTGCACAAGGAATATCCTTCTTACATAGTTTAGATGCTAACGTAATCTACCGTGATTTAAAAGCTTCCAACATTCTGCTTGATTCGGATTTTAAAGCAAAGCTTTCAGATTTTGGCTTAGCAAGGGATGGTCCTACTGGAGATAACACTCATGTTTCAACCAGAGTTGTGGGAACTCGGGGTTATGCTGCCCCTGAATATGTTGCAACAGGTCATTTAACCCCAAAGAGTGATGTATATAGCTTTGGGGTAGTCTTGTTAGAGCTGCTATCAGGTAGAAGAGCAATGGATGATGAGAAGGCTGGGGGTGTTGAAGAAACTCTAGTAGACTGGGCAAAACCTTTTCTTAGTGACAACAGGCGAGTTCTGAGAATCATGGATACTCGGTTGGGTGGTCAGTACTCGAAGAAAGGAGCTCAAGCTGCAGCATCACTTGCATTGCAGTGCCTCCACACAGACCCCAAAAACCGGCCACTTATGACAGATGTTCTAGCCGCACTGGAGCGACTTCCCACATCAAAGGACATTCCTAGGACCCCATCGCCTAGGGTAGAATATCACATTATGAAGCATTCATCAAATCCCGGTCACACTCACAAGGCAACAGCCGGAGCCACAAACTTGATTCTTACATCATTTTATTTTTTTGAATGTTTTGTGAAGCCTTGCTCCATTTCTGAAAATTGA 1269 43.74 MGNCCRRPAKCAHASSTHFSVQSDRTKPPSKANKDSTSSSQHTPFGTLNKILVSSKSDISASNSVKDFSFNDLKNASKNFRSESLLGEGGFGCVFKGWLDENTLAPTKPGTGMVVAIKKLKTESFQGHKEWLAEVNYLGQLHHENLVKLIGYCSESENRLLVYEFMSKGSLENHLFKKGVQPITWATRMSIAIDVAQGISFLHSLDANVIYRDLKASNILLDSDFKAKLSDFGLARDGPTGDNTHVSTRVVGTRGYAAPEYVATGHLTPKSDVYSFGVVLLELLSGRRAMDDEKAGGVEETLVDWAKPFLSDNRRVLRIMDTRLGGQYSKKGAQAAASLALQCLHTDPKNRPLMTDVLAALERLPTSKDIPRTPSPRVEYHIMKHSSNPGHTHKATAGATNLILTSFYFFECFVKPCSISEN* 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13866641 13870800 - Vvi6g905 Vvi6g905 788482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g905 422 SMART serkin_6 80 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g905 422 ProSiteProfiles Protein kinase domain profile. 80 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g905 422 SUPERFAMILY Protein kinase-like (PK-like) 59 374 IPR011009 -
Vvi6g905 422 MobiDBLite consensus disorder prediction 15 43 - -
Vvi6g905 422 ProSitePatterns Protein kinases ATP-binding region signature. 86 119 IPR017441 GO:0005524
Vvi6g905 422 Pfam Protein tyrosine and serine/threonine kinase 83 360 IPR001245 GO:0004672|GO:0006468
Vvi6g905 422 MobiDBLite consensus disorder prediction 12 43 - -
Vvi6g905 422 PANTHER TYROSINE KINASE FAMILY PROTEIN 23 390 - -
Vvi6g905 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Vvi6g905 422 Gene3D Phosphorylase Kinase; domain 1 54 165 - -
Vvi6g905 422 CDD STKc_IRAK 86 364 - -
Vvi6g905 422 PANTHER OS01G0588500 PROTEIN-RELATED 23 390 - -
Vvi6g905 422 Gene3D Transferase(Phosphotransferase) domain 1 166 375 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g905 Vvi8g4 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76727 PF07714 PK_Tyr_Ser-Thr 2.10E-50 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g905 - - vvi:100241109 800.816