Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g908 ATGAATCCACCTAAAGTCAAGCGTCGAGTTGGGAAATATGAGGTGGGAAGGACAATTGGGGAGGGTACATTTGCGAAAGTCAAGTTTGCAAGGAATTCTGAGACTGGGGAACCGGTTGCTATAAAGATCCTGGACAAAGAGAAGGTTCTGAAACACAAAATGGCTGAACAGATAAAGCGGGAAGTAGCAACAATGAAACTAATAAAGCATCCAAATGTTGTTCGCTTATATGAGGTAATGGGGAGCAAGACAAAGATATTCATTGTTTTAGAGTTTGTTACTGGGGGAGAGCTCTTTGACAAAATTGTAAACCATGGGCGAATGAGGGAGGATGAAGCACGAAGGTATTTCCAGCAGCTTATTAATGCTGTTGATTATTGTCACAGTAGGGGTGTCTACCACAGAGACTTAAAGCCAGAAAATCTGCTGTTGGATGCTTATGGAAACCTCAAAGTTTCTGATTTTGGATTAAGTGCATTGTCCCAACAAGTCAGGGATGATGGCCTGCTTCACACTACCTGTGGAACTCCAAACTATGTTGCCCCTGAGGTCCTTAATGACAGAGGCTATGATGGTGCAACTGCAGACTTGTGGTCCTGTGGTGTTATACTCTTTGTATTGCTTGCAGGGTACTTGCCTTTTGATGATTCTAATCTTATGATCCTATATAAAAAAATATCAGCTGCAGAATTTACTTGTCCACCTTGGCTCTCTTTCGGTGCTATGAAATTGATAACTCGCATTTTGGATCCCAACCCTATGACTCGTATTACAATCCCTGAAATTCTAGAAGATGAATGGTTTAAGAAAGGTTATAAGCCCCCTGTGTTTGAGGAGAAAGGAGATGCAAACTTGGATGATGTAGAAGCTGTATTTAAAGATTCAGAAGAACATCATGTTACAGAGAAAACGGAGGAACAACCAGCAGCAATGAATGCATTTGAATTAATTTCCATGTCAAGAGGGCTCAACCTTGGGAATTTGTTTGATATAGAACAGGGATTCAAGAGAGAAACGAGGTTCACGTCAAAATGCCCTGCCAATGAGATAATTCATAAGATTGAAGAAGCTGTGAAGCCTCTTGGGTTTGATGTTCACAAGAAAAACTATAAGATGAGGCTTGAAAATATGAAAGCTGGGAGAAAAGGGAACCTTAATGTGGCTACAGAGGTATTTCAAGTGGCACCTTCTCTTCATATGGTTGAGGTTCGAAAAGCAAAGGGAGATACTCTGGAGTTCCATAAGTTCTACAAAAATCTTTCGACCTGCCTTGAGGATGTGGTTTGGAAAACTGAGGATGACATGCAAGAAACGAAATAA 1320 40.91 MNPPKVKRRVGKYEVGRTIGEGTFAKVKFARNSETGEPVAIKILDKEKVLKHKMAEQIKREVATMKLIKHPNVVRLYEVMGSKTKIFIVLEFVTGGELFDKIVNHGRMREDEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDAYGNLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLLAGYLPFDDSNLMILYKKISAAEFTCPPWLSFGAMKLITRILDPNPMTRITIPEILEDEWFKKGYKPPVFEEKGDANLDDVEAVFKDSEEHHVTEKTEEQPAAMNAFELISMSRGLNLGNLFDIEQGFKRETRFTSKCPANEIIHKIEEAVKPLGFDVHKKNYKMRLENMKAGRKGNLNVATEVFQVAPSLHMVEVRKAKGDTLEFHKFYKNLSTCLEDVVWKTEDDMQETK* 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13941591 13951660 + Vvi6g908 Vvi6g908 788485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g908 439 PANTHER - 4 432 - -
Vvi6g908 439 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165
Vvi6g908 439 Gene3D Transferase(Phosphotransferase) domain 1 93 275 - -
Vvi6g908 439 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 4 432 - -
Vvi6g908 439 Pfam Protein kinase domain 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g908 439 SMART serkin_6 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g908 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Vvi6g908 439 Gene3D Phosphorylase Kinase; domain 1 4 92 - -
Vvi6g908 439 CDD STKc_SnRK3 12 267 - -
Vvi6g908 439 ProSiteProfiles Protein kinase domain profile. 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi6g908 439 SUPERFAMILY Protein kinase-like (PK-like) 9 295 IPR011009 -
Vvi6g908 439 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Vvi6g908 439 CDD CIPK_C 312 421 - -
Vvi6g908 439 Gene3D Kinase associated domain 1, KA1 305 430 - -
Vvi6g908 439 Pfam NAF domain 308 367 IPR004041 GO:0007165
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g908 Vvi8g469 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76728 PF00069 Pkinase 1.00E-71 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g908 - - vvi:100246229 890.952