Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g931 ATGAGGAAGAAGCTCGACACACGATTCCCTGCCTCCCGTATTAAGAAGATAATGCAAGCTGACGAAGATGTTGGGAAGATTGCTTTGGCTGTGCCTCTCCTAGTTTCTAAAGCTTTGGAACTATTTCTGCAAGATCTTTGTGATCGAACATACCAGATAACACTTGAAAGAGGAGCGAAGACAATGAGTTCTTTGCATTTGAAGCAATGTGTACAGAGATTTAATGTATTTGATTTCCTAAGAGAAATTGTCAGCAAGGTTCCTGATCTAGGTTGTTCTGATGCTGGTGGGGAGGATCGATCTGCCTCCAAAAGAAGGAAAGTTGTTGATGATGAAGGAAATGACAGTGATGAAGAGTCAAAGAGAAGCAGGATGCATGAAACAGGCCACACCGTTGGCAGTGGCAGTGGCAGTGGCAGTGGCAGAGGACGAGGAAGGGGAAGAGGAAGAGGTCGTGGGAGGGGCAGTCGAACAATAGAAAGGGATACCATTGCAGAAAGTGAGAAGCCTGAAGATGACACTGACATGCACACTAACAATGACAATCAGAGCCAAAATCCTGAGACGCGGGATAATGGGGCTGAGCCCGAAGAATCAAAGGAGAATATATCAGTTGTCAAGAATGAATCAAAGGAGAATATATCAGTTGGAAAGAATGCTGATTCATGTGTTCGAAACTTTGACCTGAATGTGGATTTGGATGAGAATGGAGACTCAACATCGATATTGCCAGCTGCCCCTGCCCCTGCCCCTGTTACCCCATCACCAAAACTTACTGAAATGAAGCATGAGGAATACCCTGGGTGGTCCCTCTCTGACATGGAAAAGATGGAGATAGATCCCATTCAACTGGCCAACTTAAATCGAAGAATAGATGAAGATGAGGAAGATTATGATGAAGAATAA 906 44.48 MRKKLDTRFPASRIKKIMQADEDVGKIALAVPLLVSKALELFLQDLCDRTYQITLERGAKTMSSLHLKQCVQRFNVFDFLREIVSKVPDLGCSDAGGEDRSASKRRKVVDDEGNDSDEESKRSRMHETGHTVGSGSGSGSGRGRGRGRGRGRGRGSRTIERDTIAESEKPEDDTDMHTNNDNQSQNPETRDNGAEPEESKENISVVKNESKENISVGKNADSCVRNFDLNVDLDENGDSTSILPAAPAPAPVTPSPKLTEMKHEEYPGWSLSDMEKMEIDPIQLANLNRRIDEDEEDYDEE* 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14421550 14429747 - Vvi6g931 Vvi6g931 788508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g931 301 MobiDBLite consensus disorder prediction 153 178 - -
Vvi6g931 301 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Vvi6g931 301 MobiDBLite consensus disorder prediction 191 207 - -
Vvi6g931 301 SUPERFAMILY Histone-fold 4 88 IPR009072 GO:0046982
Vvi6g931 301 Coils Coil 284 301 - -
Vvi6g931 301 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 301 - -
Vvi6g931 301 MobiDBLite consensus disorder prediction 90 223 - -
Vvi6g931 301 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Vvi6g931 301 MobiDBLite consensus disorder prediction 98 128 - -
Vvi6g931 301 PANTHER HISTONE SUPERFAMILY PROTEIN 1 301 - -
Vvi6g931 301 MobiDBLite consensus disorder prediction 235 260 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g931 K21752 DRAP1, NC2-alpha; Dr1-associated corepressor - vvi:100253016 531.176
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi6g931 Vvi13g930 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g931 . . . . Bpe01g00338 . . . . . . . . . . . . . . . . . . . Cla02g02187 . Cec02g2370 Cco02g2412 . . Cre02g2564 . . . . . Csa06g02481 . Cme05g00230 . Blo14g00304 . . . . . Bma11g00317 . . Cmo20g00152 . Cma20g00136 . Car20g00114 Cpe16g00834 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi17g85 . 1 146 CCAAT-HAP5 Transcription Factor Family AT3G48590 67.2 9.4e-57 217.2
Vvi17g85 . 1 146 CCAAT-HAP5 Transcription Factor Family AT5G63470 60.0 5.9e-49 191.4
Vvi6g931 ECH 1 301 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.1 2.5e-62 236.1
Vvi13g930 ECH 1 136 CCAAT-HAP5 Transcription Factor Family AT3G12480 74.6 5.5e-54 208.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014052 0 0 0 1 1 0 1 1 1 0 1 0 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14976 PF00808 CBFD_NFYB_HMF 1.60E-17 CL0012 Vvi TF