Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g931 ATGAGGAAGAAGCTCGACACACGATTCCCTGCCTCCCGTATTAAGAAGATAATGCAAGCTGACGAAGATGTTGGGAAGATTGCTTTGGCTGTGCCTCTCCTAGTTTCTAAAGCTTTGGAACTATTTCTGCAAGATCTTTGTGATCGAACATACCAGATAACACTTGAAAGAGGAGCGAAGACAATGAGTTCTTTGCATTTGAAGCAATGTGTACAGAGATTTAATGTATTTGATTTCCTAAGAGAAATTGTCAGCAAGGTTCCTGATCTAGGTTGTTCTGATGCTGGTGGGGAGGATCGATCTGCCTCCAAAAGAAGGAAAGTTGTTGATGATGAAGGAAATGACAGTGATGAAGAGTCAAAGAGAAGCAGGATGCATGAAACAGGCCACACCGTTGGCAGTGGCAGTGGCAGTGGCAGTGGCAGAGGACGAGGAAGGGGAAGAGGAAGAGGTCGTGGGAGGGGCAGTCGAACAATAGAAAGGGATACCATTGCAGAAAGTGAGAAGCCTGAAGATGACACTGACATGCACACTAACAATGACAATCAGAGCCAAAATCCTGAGACGCGGGATAATGGGGCTGAGCCCGAAGAATCAAAGGAGAATATATCAGTTGTCAAGAATGAATCAAAGGAGAATATATCAGTTGGAAAGAATGCTGATTCATGTGTTCGAAACTTTGACCTGAATGTGGATTTGGATGAGAATGGAGACTCAACATCGATATTGCCAGCTGCCCCTGCCCCTGCCCCTGTTACCCCATCACCAAAACTTACTGAAATGAAGCATGAGGAATACCCTGGGTGGTCCCTCTCTGACATGGAAAAGATGGAGATAGATCCCATTCAACTGGCCAACTTAAATCGAAGAATAGATGAAGATGAGGAAGATTATGATGAAGAATAA 906 44.48 MRKKLDTRFPASRIKKIMQADEDVGKIALAVPLLVSKALELFLQDLCDRTYQITLERGAKTMSSLHLKQCVQRFNVFDFLREIVSKVPDLGCSDAGGEDRSASKRRKVVDDEGNDSDEESKRSRMHETGHTVGSGSGSGSGRGRGRGRGRGRGRGSRTIERDTIAESEKPEDDTDMHTNNDNQSQNPETRDNGAEPEESKENISVVKNESKENISVGKNADSCVRNFDLNVDLDENGDSTSILPAAPAPAPVTPSPKLTEMKHEEYPGWSLSDMEKMEIDPIQLANLNRRIDEDEEDYDEE* 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14421550 14429747 - Vvi6g931 Vvi6g931 788508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g931 301 MobiDBLite consensus disorder prediction 153 178 - -
Vvi6g931 301 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Vvi6g931 301 MobiDBLite consensus disorder prediction 191 207 - -
Vvi6g931 301 SUPERFAMILY Histone-fold 4 88 IPR009072 GO:0046982
Vvi6g931 301 Coils Coil 284 301 - -
Vvi6g931 301 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 301 - -
Vvi6g931 301 MobiDBLite consensus disorder prediction 90 223 - -
Vvi6g931 301 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Vvi6g931 301 MobiDBLite consensus disorder prediction 98 128 - -
Vvi6g931 301 PANTHER HISTONE SUPERFAMILY PROTEIN 1 301 - -
Vvi6g931 301 MobiDBLite consensus disorder prediction 235 260 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g931 Vvi13g930 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14976 PF00808 CBFD_NFYB_HMF 1.60E-17 CL0012 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g931 K21752 - vvi:100253016 531.176