Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g948 ATGGCACCAATGGATGAAAGATCTTCGTCTGTTACTTCTTCGCCTCTCCAATTGTTCTCCATGATGTCACCTTCACCCAGCTTGGGATCACCATATCCATGGCTTAGAGAGCTAAAATCCGAGGAGCGGGGCCTGTGTTTGATCCATTTGCTACTCACTTGTGCAAACCATGTTGCTTCTGGTAGCCTGGAAAATGTGAATATTGCCCTGGAGCAAATCTCCCAACTTGCCTCTGCTGATGGTGATACCATGCAGCGCATTGCTGCTTACTTCACGGAGGCACTTGCTGATCGGATACTCAAGACATGGTCTGGTCTCCACAAGGCCCTCAACTCCACCAGAATATCTTTTCCTTCTGAGGATATTCTTGTTCGGAAACTATTTTTTGAGTTGTTTCCATTCTTGAAGATGGCATATGTGATCACTAACCACACTATTATTGAAGCTATGGAAGGGGAAAAGATGGTTCATATAATTGATCTCAATTCGGCTGAACCTGCACAATGGATTGCACTTCTTCAGGCCTTGAGTGCTCGCCCCGAAGGCCCACCCCATTTGAGAATCACAGGGATTCATCCTCAGAAAGAGGTCTTAGAGCAAATGGCTCACAGATTAACCGAGGAAGCAGAGAAATTGGATATTCCATTTCAGTTCAATCCCATTGTTAGCAAATTAGAGAATCTTGATTTTGAGAAGCTGCGAGTTAAGACTGGGGAAGCTCTAGCAATCAGCTCAGTTCTCCAATTGCATTCCTTTTTGGCCTATGATGATGAATTCCTTAGGAAAAAATCCCCACTAGCATCAAAAAATTCAAATGGGGTTCAATTGCAAAGAGTTCGCCAAAAATGGATGGCTTTCTTAATGCATTTTCTTCTTGATTTCATTTTCTTAAGATTATTTTCAATTTGTTTTCATCTATTTATTGATTCTCGAGATGATGATTGTATGAGTTGTGAACATTGCACAACCACATTGTTGATTTTGGGTATTTTCTTTTCATTTTTTAGTTCTAAGCTACTATGCTTTATTTTTGTCATTTTAGGTGTTTGCAAGATATTTGATCATTTGTCTAAATCATTTTTCAAGCCTTGCTTGGTTGGGTTTTGCTTATTTCTTAGTGGTTTTTATTTATTTATTTATTTTTTATGGAAGCCCATTGAGTTAAAATATGATATTGAGCTTATATCGGTTTATGATCTTTGA 1203 39.24 MAPMDERSSSVTSSPLQLFSMMSPSPSLGSPYPWLRELKSEERGLCLIHLLLTCANHVASGSLENVNIALEQISQLASADGDTMQRIAAYFTEALADRILKTWSGLHKALNSTRISFPSEDILVRKLFFELFPFLKMAYVITNHTIIEAMEGEKMVHIIDLNSAEPAQWIALLQALSARPEGPPHLRITGIHPQKEVLEQMAHRLTEEAEKLDIPFQFNPIVSKLENLDFEKLRVKTGEALAISSVLQLHSFLAYDDEFLRKKSPLASKNSNGVQLQRVRQKWMAFLMHFLLDFIFLRLFSICFHLFIDSRDDDCMSCEHCTTTLLILGIFFSFFSSKLLCFIFVILGVCKIFDHLSKSFFKPCLVGFCLFLSGFYLFIYFLWKPIELKYDIELISVYDL* 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14790168 14796395 + Vvi6g948 Vvi6g948 788525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g948 400 PANTHER BNAA06G02820D PROTEIN 5 265 IPR030008 GO:0003700|GO:0005634|GO:0009739
Vvi6g948 400 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 5 265 IPR005202 -
Vvi6g948 400 ProSiteProfiles GRAS family profile. 38 400 IPR005202 -
Vvi6g948 400 Pfam GRAS domain family 47 256 IPR005202 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g948 Vvi8g4 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14977 PF03514 GRAS 8.10E-76 CL0063 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g948 - - vvi:100253019 521.931