Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g956 ATGTTGAGATCAGGCTCTGCGTTTCTTCTTCTTCTTCTTGTATTTGTCTCTTTTTCAGGATATGTAGAAGCTTACAAGAACTACACAGTGGGTGACTCCTTGGGATGGTACGATAACCTCCATGAGCCTAGTGTCAATTACCAGAAATGGGTTGCTGGCAAGAACTTCAGCTTGGGTGATTTCCTCATTTTCAACACCGATAATAACCATTCAGTGGTCCAAACCTACAATTTCACGACCTACAAGCATTGCGATTACGAGAACGCCCTAGAAAACGACACGTACCAGTGGTCGGCCACCGATCCCTCCGCCACCAACCCCGTGGCTGTGACGGTGCCGGTCCCCCTGATGAAGGAGGGAATGACCTATTTCTTTTCCAGTGACTACGACGGTTGGCAATGCAAGCATGGGCAGCACTTCAAGCTGAACGTGAGTCATGGGCAAGGCCTGCCTCCCAGCCTTAAAGACCCAGCAGATGAGGCCCCTGGTCCAGTGGCCCCTGATTCTGGAGATGAAGGAGACTCCGCCCCTGACACTGTGGTTCCGGCCAACTTCAATGACCCCAAACAGGAAAATGATACTGACAACACATCAGGGTCTGCTCCTTTGCTGCCATCGTTCTTACACCAGTTGGATTACAAATTCAGTGGAATTTTGGCTTTGTTAGGTGTTGTTTGTATTTTTTGA 687 49.05 MLRSGSAFLLLLLVFVSFSGYVEAYKNYTVGDSLGWYDNLHEPSVNYQKWVAGKNFSLGDFLIFNTDNNHSVVQTYNFTTYKHCDYENALENDTYQWSATDPSATNPVAVTVPVPLMKEGMTYFFSSDYDGWQCKHGQHFKLNVSHGQGLPPSLKDPADEAPGPVAPDSGDEGDSAPDTVVPANFNDPKQENDTDNTSGSAPLLPSFLHQLDYKFSGILALLGVVCIF* 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15071171 15072602 + Vvi6g956 Vvi6g956 788533

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g956 228 Pfam Plastocyanin-like domain 39 138 IPR003245 GO:0009055
Vvi6g956 228 SUPERFAMILY Cupredoxins 26 144 IPR008972 -
Vvi6g956 228 PANTHER BLUE COPPER PROTEIN 4 164 IPR039391 GO:0009055
Vvi6g956 228 Gene3D - 25 149 IPR008972 -
Vvi6g956 228 MobiDBLite consensus disorder prediction 146 198 - -
Vvi6g956 228 ProSiteProfiles Phytocyanin domain profile. 26 146 IPR003245 GO:0009055
Vvi6g956 228 PANTHER BNAA08G26900D PROTEIN 4 164 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g956 - - - vvi:100244402 468.774
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g956 . . . . . . . . . . . . . . . Cpe05g00463 . . . . . . . . Cla02g02197 Cam02g2342 Cec02g2381 Cco02g2423 Clacu02g2315 Cmu02g2248 Cre02g2575 . Cone5ag1429 . . . Csa06g02492 Chy05g00185 Cme05g00219 . . . . . . . . . . Cmo20g00135 . Cma20g00126 . Car20g00109 Cpe16g00842 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi17g376 . 10 131 Phytocyanin Superfamily AT1G48940 58.5 5.2e-39 157.9
Vvi14g1593 . 3 146 Phytocyanin Superfamily AT3G01070 52.7 1.6e-37 152.9
Vvi4g584 . 14 174 Phytocyanin Superfamily AT2G25060 54.0 1.5e-41 166.4
Vvi14g1593 . 8 158 Phytocyanin Superfamily AT5G15350 52.0 2.9e-47 185.3
Vvi4g584 . 25 177 Phytocyanin Superfamily AT4G31840 52.9 2.5e-41 165.6
Vvi17g376 . 1 131 Phytocyanin Superfamily AT3G18590 58.8 2.5e-39 159.1
Vvi17g376 . 1 131 Phytocyanin Superfamily AT3G18590 58.8 2.5e-39 159.1
Vvi17g376 . 10 131 Phytocyanin Superfamily AT1G48940 58.5 5.2e-39 157.9
Vvi2g224 . 6 151 Phytocyanin Superfamily AT1G64640 60.5 4.3e-39 158.3
Vvi4g584 . 14 159 Phytocyanin Superfamily AT5G25090 52.9 3.5e-38 155.2
Vvi4g584 . 14 174 Phytocyanin Superfamily AT2G25060 54.0 1.5e-41 166.4
Vvi4g584 . 25 177 Phytocyanin Superfamily AT4G31840 52.9 2.5e-41 165.6
Vvi14g1593 . 3 146 Phytocyanin Superfamily AT3G01070 52.7 1.6e-37 152.9
Vvi14g1593 . 8 158 Phytocyanin Superfamily AT5G15350 52.0 2.9e-47 185.3
Vvi6g956 . 6 189 Phytocyanin Superfamily AT1G08500 59.2 5.8e-59 224.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013663 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 0 1 1 1 26