Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi6g958 | ATGGCTGCGTCCAAGTCGGATATTAGGAAGTGGTTTATGAAAAAACATGACAACGACAATGGCAATCCGTTGAAGCCTGCAAAACCTGAGCCTAAAGCTTCACAATCAGGGAAACCTTCTCCAGCTACTGTGCAGCAGGAGAAACCTGTGCATGGAGGCCAAGAAAGTTCTTGCAGAAGGAAGACTAGCAAGTATTTTCAAAAGCCTAAAGATGAGAAGGAAATGGAAGAACTCCCAGCTAAAAGAAAGACCCAGAAGGGTACTAAGGAATCATTGAACCCCCCACCTTCCAAAAAAATTCGCCGAGTTGTCGATGATGATGATGATGACTTTGTCTTGCATAAAAGTGATGATGAGAAAGTTGATAAAGATACAGAACCTCCTATTAAATCTGGTGGAAGGGGTCGTGGTGGAAGAGGTGCATTGGTAACACCAGCTGGTGGAAGAGGCAGAGGTGGTGGACGCGGTGGATTTATGAATTTTGGAGAAAGGAAGGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTTCTGATTGTTTGGCTGGTTTGACATTTGTAATTAGTGGAACCCTTGACAGTTTGGAAAGGGAAGAAGCAGAGGATCTGATCAAGCGCCATGGTGGTCGTGTTACTGGATCTGTTAGCAAAAAAACAAATTTTCTTTTATGTGATGAAGATATTGGGGGCAATAAGTCTGCTAAGGCCAAAGAGCTGGGCACTGCCTTTCTTACCGAGGATGGACTGTTTGATATGATCTGTGCATCAAATCATGCAAAAGCACCTGCACGAGGGGAACCAAAAAAGTCTTTGGATAAGGTTGTGTTGGCAACACCAAAGAAAAGTCCTCAGAAAGTGGAAAAGAAAGTGGATCAAGTGGTCAACTCTTCAGGAAAACGCACAGTTTTGGCAGCTACCACTCCTAAGCATATATATCAAACTATTGGACATGCTTCATTGACATGGACTGAAAAATATAAGCCAAAGGTTCCAAATGACATCATTGGGAATCAGTCACTGGTTAAACAGCTTCATGAATGGTTGGCACATTGGAATGAGCAATTTCTTCATACTGGCACTAAGGGAAAAGGGAAAAAACAGAATGATTCTGGTGCTAAAAAAGCTGTACTGTTAAGTGGAACACCTGGTATAGGAAAGACTACATCAGCAAAGTTGGTTAGTCAGATGCTGGGTTTCCAGGCAATTGAGGTAAATGCCAGTGATAATCGTGGAAAGGCTAATGCCAAAATTGATAAAGGAATTGGTGGAAGCAATGCAAATTCTATAAAGGAACTCGTCAGTAATGAAGCTTTGGGTGCTCACATGGATAGGTCAAAGCATCCAAAGACTGTGCTGATTATGGATGAGGTTGATGGGATGTCTGCTGGAGATAGAGGGGGAGTGGCTGATCTTATTGCTAGCATCAAGATTTCCAAAATTCCCATCATCTGCATCTGTAATGATCGCTACAGTCAGAAACTAAAAAGTCTAGTGAACTACTGTTTGCTTCTCAGCTTCCGAAAACCTACAAAACAACAGATGGCAAAGAGGTTATTGCAAGTTGCAAATGCAGAAGGCCTTCAAGTCAATGAGATTGCCCTTGAGGAACTTGCAGAAAGAGTTAATGGAGATATGCGCATGGCACTAAACCAGTTGCAGTACATGAGCCTCTCCATGTCAGTCATTAAATATGATGATGTAAGGCAGCGGCTTCTGAGCAGTGCAAAAGATGAAGATATTTCACCATTTGTGGCTGTTGATAAGCTGTTTGGTTTTAATGGGGGAAAGCTGAGAATGGATGAGCGGATTGACCTCAGCATGAGTGACCCTGATCTAGTTCCACTTCTTATTCAGGAAAACTATATCAATTATAGGCCAACTTTGGCTGGTAAGGATGACAATGGGGTGAAACGGATGAGCTTGCTTGCTCGTGCTGCTGAGTCTATTGGTGATGGGGATATAATTAATGTACAGATTCGAAGATATCGACAGTGGCAACTCTCTCAAGCTGGCTCCTTTGCATCCTGTATAACTCCTGCTGCACTCTTGCATGGGCAAAGGGAGACACTTGAACAGGGAGAACGCAATTTTAATAGATTTGGTGGCTGGCTGGGAAAAAACTCAACAATGGGAAAAAATAAGAGACTCTTGGAGGATCTGCATGTTCATCTTCTTGCTTCTCGTGAATCTAATTCTGGAAGGGGAACCTTGCGAATTGATTACCTTACTCTAATTCTGAAACGGTTGACTGATCCACTACGCATGCTGCCTAAGGATGACGCTGTTCAGAAAGTTGTGGAGTTCATGGATTTATACTCTATAAGTCAGGAGGACTTTGATACTATTGTGGAGTTATCTAAATTTCAGGGGCACCCAAGTCCACTGGAGGGCATACAGCCAGCTGTCAAGTCAGCTTTAACAAAGGCTTACAATAAAGGAAGTAGCTCTCGCTTGGTGCGTGCAGCTGATTTAATCACACTTCCTGGAATCAAAAAGGCCCCCAAGAAGCGAATTGCTGCAATTCTAGAGCCAGTAGATGATGAATTGGCAAGAGAGAACGGTGATGCATTGGCGGAAAGTGAAGAAGAAAACTCTTCAGACACAGATGACATGGACACTGCTAATGGTGATAAGAAGCTGCCAGTGGATCTCCAGAATCTCAACTCTAAAGGAATTAAAGTAGAACTAGACTTAAAAGGTGCTGGGAGTTCTAGTGCCAAGAAAACACCAGCAGGCAGAGGAAGAGGAGGAGGTTCTGCATCCACAGAGAAGAAAGGGGGCAGAGGCTCAGGGGCTGCTGGTGCCAAGAGAAAGAGGTAG | 2826 | 43.6 | MAASKSDIRKWFMKKHDNDNGNPLKPAKPEPKASQSGKPSPATVQQEKPVHGGQESSCRRKTSKYFQKPKDEKEMEELPAKRKTQKGTKESLNPPPSKKIRRVVDDDDDDFVLHKSDDEKVDKDTEPPIKSGGRGRGGRGALVTPAGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGASDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNFLLCDEDIGGNKSAKAKELGTAFLTEDGLFDMICASNHAKAPARGEPKKSLDKVVLATPKKSPQKVEKKVDQVVNSSGKRTVLAATTPKHIYQTIGHASLTWTEKYKPKVPNDIIGNQSLVKQLHEWLAHWNEQFLHTGTKGKGKKQNDSGAKKAVLLSGTPGIGKTTSAKLVSQMLGFQAIEVNASDNRGKANAKIDKGIGGSNANSIKELVSNEALGAHMDRSKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLLQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYMSLSMSVIKYDDVRQRLLSSAKDEDISPFVAVDKLFGFNGGKLRMDERIDLSMSDPDLVPLLIQENYINYRPTLAGKDDNGVKRMSLLARAAESIGDGDIINVQIRRYRQWQLSQAGSFASCITPAALLHGQRETLEQGERNFNRFGGWLGKNSTMGKNKRLLEDLHVHLLASRESNSGRGTLRIDYLTLILKRLTDPLRMLPKDDAVQKVVEFMDLYSISQEDFDTIVELSKFQGHPSPLEGIQPAVKSALTKAYNKGSSSRLVRAADLITLPGIKKAPKKRIAAILEPVDDELARENGDALAESEEENSSDTDDMDTANGDKKLPVDLQNLNSKGIKVELDLKGAGSSSAKKTPAGRGRGGGSASTEKKGGRGSGAAGAKRKR* | 942 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 15204660 | 15228479 | + | Vvi6g958 | Vvi6g958 | 788535 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi6g958 | 941 | MobiDBLite | consensus disorder prediction | 95 | 130 | - | - | |
Vvi6g958 | 941 | PIRSF | RFC1 | 3 | 134 | IPR012178 | GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281 | |
Vvi6g958 | 941 | PIRSF | RFC1 | 142 | 913 | IPR012178 | GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281 | |
Vvi6g958 | 941 | MobiDBLite | consensus disorder prediction | 36 | 52 | - | - | |
Vvi6g958 | 941 | CDD | BRCT_RFC1 | 178 | 255 | - | - | |
Vvi6g958 | 941 | MobiDBLite | consensus disorder prediction | 162 | 177 | - | - | |
Vvi6g958 | 941 | Pfam | Replication factor RFC1 C terminal domain | 651 | 814 | IPR013725 | GO:0003689|GO:0005524|GO:0005663|GO:0006260 | |
Vvi6g958 | 941 | SUPERFAMILY | BRCT domain | 178 | 257 | IPR036420 | - | |
Vvi6g958 | 941 | Pfam | ATPase family associated with various cellular activities (AAA) | 378 | 477 | IPR003959 | GO:0005524|GO:0016887 | |
Vvi6g958 | 941 | Gene3D | - | 511 | 581 | - | - | |
Vvi6g958 | 941 | PANTHER | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | 25 | 912 | - | - | |
Vvi6g958 | 941 | Gene3D | BRCT domain | 155 | 256 | IPR036420 | - | |
Vvi6g958 | 941 | CDD | HLD_clamp_RFC | 511 | 569 | - | - | |
Vvi6g958 | 941 | PANTHER | REPLICATION FACTOR C SUBUNIT 1 | 25 | 912 | - | - | |
Vvi6g958 | 941 | CDD | AAA | 371 | 474 | - | - | |
Vvi6g958 | 941 | Gene3D | - | 322 | 510 | IPR027417 | - | |
Vvi6g958 | 941 | Gene3D | - | 583 | 693 | - | - | |
Vvi6g958 | 941 | SMART | BRCT_7 | 180 | 258 | IPR001357 | - | |
Vvi6g958 | 941 | SMART | AAA_5 | 374 | 512 | IPR003593 | - | |
Vvi6g958 | 941 | MobiDBLite | consensus disorder prediction | 854 | 941 | - | - | |
Vvi6g958 | 941 | MobiDBLite | consensus disorder prediction | 8 | 23 | - | - | |
Vvi6g958 | 941 | Pfam | BRCA1 C Terminus (BRCT) domain | 180 | 255 | IPR001357 | - | |
Vvi6g958 | 941 | MobiDBLite | consensus disorder prediction | 53 | 88 | - | - | |
Vvi6g958 | 941 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 322 | 571 | IPR027417 | - | |
Vvi6g958 | 941 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 582 | 727 | IPR008921 | GO:0003677|GO:0006260 | |
Vvi6g958 | 941 | ProSiteProfiles | BRCT domain profile. | 178 | 255 | IPR001357 | - | |
Vvi6g958 | 941 | MobiDBLite | consensus disorder prediction | 1 | 177 | - | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi6g958 | K10754 | - | vvi:100249625 | 1741.86 |