Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g962 ATGGCTTTTGTAGCTCTTGTACTCCTGTCCCTCCTGACTCCTCTCGTCTCTGTTTACTCCTCCGATGATGTAAAACCATGGTGCAGCCAGACACCCCACCCTCAACCTTGTGAATACTTTTTGAGCCAAAAGACTGATCACTCCCTCATCAAACAAAAGTCCGATTTTCTCAACATATCAATGCAACTTGCTTTGGAACGTGCCATGATTGCTCATGGTGACACCTTTTCCCTGGGCTCCAAGTGCCGGAATGAGCGAGAAAAGGCTGCATGGAATGATTGTCTAGAGCTCTACGAGCACACCATTCTTAAGCTCAATAAAACTCTTGATTCCAACACTAGGTGCACCCAAGCTGATGCTCAAACATGGCTTAGCACTGCTCTTACCAACCTCCAAACATGCCAAGACGGGTTCATCGACCTTGGTGTATCAGACTATGTTTTGCCCTTAATGTCCAACAATGTTTCCAAGTTGATTAGCAACACTCTATCCATCAACAAAGTTCCATATGCTGAGCCTAGTTACAAAGGCGGTTACCCAACTTGGGTGAAGCCTGGTGACCGAAAGCTTTTGCAGTCTTCTTCTCTGGCTTCACAGGCGAATATTGTGGTGTCCAAAGATGGCTCAGGGGATTACACAACAATAGGAGCAGCAATCACTGCAGCTTCCAAGCGATCAGGAAGTGGAAGGTATGTGATATATGTGAAGGCAGGGACATATAGTGAGAATGTTCAGATTGGAAGCGGTTTGAAGAATATAATGTTGTTGGGTGATGGGATTGGAAAGACCATAGTCACTGGAAGTAAGAGTGTGGGGGGAGGCTCTACTACATTCAATTCCGCTACAGTTGCTGTGGTTGGCGACGGCTTCATAGCTCGTGGCATGACATTCCGTAACACTGCTGGAGCATCCAACCACCAGGCAGTGGCTCTACGATCCGGGTCGGACCTCTCAGTTTATTACCAATGTAGCTTTGAAGGGTACCAAGACACTCTCTACACCTACTCTGAGCGACAATTCTATAGAGAATGCGATATATATGGTACTGTGGATTTCATTTTCGGAAATGCTGCAGTTGTGTTTCAAAATTGCAATATTTACGTACGTAACCCTCCCAACAAGATCAACACAGTAACTGCCCAAGGTAGGACTGACCCTAACCAAAACACTGGAATTTCCATACACGACTGTAAGGTTACAGCTGCTTCAGATCTAAAGGCAATATATACTTTGTGTGCTCAGAAATAA 1248 45.43 MAFVALVLLSLLTPLVSVYSSDDVKPWCSQTPHPQPCEYFLSQKTDHSLIKQKSDFLNISMQLALERAMIAHGDTFSLGSKCRNEREKAAWNDCLELYEHTILKLNKTLDSNTRCTQADAQTWLSTALTNLQTCQDGFIDLGVSDYVLPLMSNNVSKLISNTLSINKVPYAEPSYKGGYPTWVKPGDRKLLQSSSLASQANIVVSKDGSGDYTTIGAAITAASKRSGSGRYVIYVKAGTYSENVQIGSGLKNIMLLGDGIGKTIVTGSKSVGGGSTTFNSATVAVVGDGFIARGMTFRNTAGASNHQAVALRSGSDLSVYYQCSFEGYQDTLYTYSERQFYRECDIYGTVDFIFGNAAVVFQNCNIYVRNPPNKINTVTAQGRTDPNQNTGISIHDCKVTAASDLKAIYTLCAQK* 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15304497 15306529 + Vvi6g962 Vvi6g962 788539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g962 415 SUPERFAMILY Pectin lyase-like 195 406 IPR011050 -
Vvi6g962 415 CDD PMEI-like_3 27 167 - -
Vvi6g962 415 Pfam Plant invertase/pectin methylesterase inhibitor 23 165 IPR006501 GO:0004857
Vvi6g962 415 Gene3D Invertase/pectin methylesterase inhibitor family protein 18 168 IPR035513 -
Vvi6g962 415 TIGRFAM PME_inhib: pectinesterase inhibitor domain 4 168 IPR006501 GO:0004857
Vvi6g962 415 ProSitePatterns Pectinesterase signature 2. 346 355 IPR033131 -
Vvi6g962 415 Gene3D - 172 411 IPR012334 -
Vvi6g962 415 SMART PMEI_2 19 165 IPR006501 GO:0004857
Vvi6g962 415 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 21 168 IPR035513 -
Vvi6g962 415 Pfam Pectinesterase 201 407 IPR000070 GO:0030599|GO:0042545
Vvi6g962 415 PANTHER PECTINESTERASE 6 406 - -
Vvi6g962 415 PANTHER PECTINESTERASE 6 406 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g962 K01051 - vvi:100242757 793.882