Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g963 ATGACTGCTCATGGTAACATATTTTCGCTAGGTTCCAAGTGCCGGAATGAGCGAGAAAAGGCTGCATGGAATGATTGTGTCGAGCTCTATGACCACACCATTCTTAAGCTCAACAAAACTCTCGATCCCAACACTAGGTGTACCCAAGTTGACGCTCAAACATGGCTCAGCACTGCTCTTACCAACCTCCAAACATGCCAAGACGGGTTCATCGAGCTCGGTGTGTCAGACCACTTTTTGCCCTTAATATCCAACAATGTTTCTAAGTTGATTAGCAACACTCTATCCATCAACAAAGTTCCATATGCTGAGCCTAGTTACAAAGGGGGTTACCCAACTTGGGTGAAACCCGGTGACCGAAAGCTTTTGCAGTCTTCTTCTCTGGCTTCGCAGGCTAATATTGTGGTGTCAAAAGATGGCTCAGGGGATTACACGACAATCGGAGCAGCAATCACTGCAGCATCCAAGCGATCAGGAAGTGGAAGGTATGTGATATATGTGAAGGCAGGGACATACAGTGAGAATGTTCAGATTGGAAGCGGTCTGAAGAATATAACGCTGTTGGGTGATGGGATTGGAAAGACCATTGTTACTGGAAGTAGGAGTGTGGGGGGAGGATCTACTACTTACAATTCAGCTACTGTTGCTGTGGTTGGAGATGGCTTCATAGCTCGCGGCATGACAATCCGTAACACTGCTGGAGCGTCCAACCACCAGGCAGTGGCTCTACGATCCGGGTCCGACCTCTCAGTGTATTACCAATGTAGCTTCGAAGGCTACCAGGACACACTCTACGTCTACTCTGACAGACAATTCTATAGAGAATGCGATATCTATGGGACTGTGGATTTCATTTTTGGAAATGCTGCAGTTGTGTTTCAAAAGTGCAATATTTATGCACGTAACCCTCCCAACAAGGTCAACACAGTAACTGCCCAAGGTAGGACTGACCCTAACCAAAACACTGGAATTTCCATACACGACTGTGAGGTTACAGCTGCTTCAGATCTAAAGGCTGTCCAAAGCTCGGTCAAGACATACCTTGGAAGGCCATGGAAAGAATATTCTCGGACCGTCTTCCTAAAGACCTACCTTGATAGCCTAATAAACTCGGCTGGTTGGTTGGAATGGAGCGGTGACTTTGCCCTAAACACACTGTATTATGGAGAGTACATGAATACTGGCCCCGGGTCATCCACATCTGGTAGGGTAAATTGGACTGGCTATCATGTGATTACTAGCTCAACTGAAGCAGCAAAGTTCACTGTTGGTAACTTCATCTCCGGCAATTCCTGGTTACCATCTACCAACGTTCCTTTCACTTCTGGCCTTTGA 1335 46.67 MTAHGNIFSLGSKCRNEREKAAWNDCVELYDHTILKLNKTLDPNTRCTQVDAQTWLSTALTNLQTCQDGFIELGVSDHFLPLISNNVSKLISNTLSINKVPYAEPSYKGGYPTWVKPGDRKLLQSSSLASQANIVVSKDGSGDYTTIGAAITAASKRSGSGRYVIYVKAGTYSENVQIGSGLKNITLLGDGIGKTIVTGSRSVGGGSTTYNSATVAVVGDGFIARGMTIRNTAGASNHQAVALRSGSDLSVYYQCSFEGYQDTLYVYSDRQFYRECDIYGTVDFIFGNAAVVFQKCNIYARNPPNKVNTVTAQGRTDPNQNTGISIHDCEVTAASDLKAVQSSVKTYLGRPWKEYSRTVFLKTYLDSLINSAGWLEWSGDFALNTLYYGEYMNTGPGSSTSGRVNWTGYHVITSSTEAAKFTVGNFISGNSWLPSTNVPFTSGL* 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15354031 15355836 + Vvi6g963 Vvi6g963 788540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g963 444 ProSitePatterns Pectinesterase signature 2. 278 287 IPR033131 -
Vvi6g963 444 CDD PMEI-like_3 3 99 - -
Vvi6g963 444 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 4 100 IPR035513 -
Vvi6g963 444 SMART PMEI_2 2 97 IPR006501 GO:0004857
Vvi6g963 444 Pfam Pectinesterase 133 430 IPR000070 GO:0030599|GO:0042545
Vvi6g963 444 Gene3D - 128 444 IPR012334 -
Vvi6g963 444 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 100 IPR035513 -
Vvi6g963 444 SUPERFAMILY Pectin lyase-like 127 443 IPR011050 -
Vvi6g963 444 Pfam Plant invertase/pectin methylesterase inhibitor 12 97 IPR006501 GO:0004857
Vvi6g963 444 PANTHER PECTINESTERASE 3 443 - -
Vvi6g963 444 PANTHER PECTINESTERASE 3 443 - -
Vvi6g963 444 TIGRFAM PME_inhib: pectinesterase inhibitor domain 10 100 IPR006501 GO:0004857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g963 K01051 - vvi:100259777 892.108