Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g964 ATGTTGGTGGGTGATGGAATTGGAAAGACCATAGTTACCGGAAGTAAGAGTGTGGGGGGAGGCTCTACTACATTCAAGTCAGCTACAGTTGCTGTGGTTGGAGATGGCTTCATAGCTCGTGGCATGACATTCCGTAACACCGCTGGAGCATCCAACCACCAGTCAGTGGCTCTACGATCCGGGTCTGACCTCTCAGTGTATTACCAATGTAGCTTTGAAGGGTACCAAGATACTCTCTACACTTACTCTGAGCGACAGTTCTATAGAGGATGCGATATATATGGGACTGTGGATTTCATATTTGGGAATGCTGCAGTTGTGTTTCAAAATTGCAACATTTATGCTCGTAACCCTCCCAACAAGATCAACACAGTAACTGCCCAAGGCAGGACTGACCCTAACCAAAACACTGGAATTTCCATACACGACTGTAAGGTTACCGCTGCTTCCGATCTAAAGCCAGTCCAAGGCTCGGTCAAGACATACCTTGGAAGGCCATGGAAAGAATATTCTCGGACCGTCTTCCTAAAGACCTACCTTGATAGCCTAATAAACTCGGCAGGTTGGTTGGAATGGAGTGGTAACTTTGCCCTAAACACACTGTATTATGGAGAGTACATGAATACAGGCGACGGGTCATCCACATCTGGTAGGGTAAAATGGGCTGGCTATCATGTGATTACTAGCTCAACCGAAGCAGCAAAGTTCACGGTTGGTAACTTCATCTCCGGCAATTCCTGGTTACCATCTACCAACGTTCCTTTCACTTCTGGCCTTTGA 780 46.79 MLVGDGIGKTIVTGSKSVGGGSTTFKSATVAVVGDGFIARGMTFRNTAGASNHQSVALRSGSDLSVYYQCSFEGYQDTLYTYSERQFYRGCDIYGTVDFIFGNAAVVFQNCNIYARNPPNKINTVTAQGRTDPNQNTGISIHDCKVTAASDLKPVQGSVKTYLGRPWKEYSRTVFLKTYLDSLINSAGWLEWSGNFALNTLYYGEYMNTGDGSSTSGRVKWAGYHVITSSTEAAKFTVGNFISGNSWLPSTNVPFTSGL* 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15367500 15369297 - Vvi6g964 Vvi6g964 788541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g964 259 Pfam Pectinesterase 1 245 IPR000070 GO:0030599|GO:0042545
Vvi6g964 259 ProSitePatterns Pectinesterase signature 2. 93 102 IPR033131 -
Vvi6g964 259 PANTHER PECTINESTERASE 1 258 - -
Vvi6g964 259 SUPERFAMILY Pectin lyase-like 1 258 IPR011050 -
Vvi6g964 259 Gene3D - 1 259 IPR012334 -
Vvi6g964 259 PANTHER PECTINESTERASE 1 258 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g964 K01051 - vvi:100258155 526.554