Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi6g966 ATGTTGCTGGGTGATGGAATTGGAAAGACCATAGTGACCGGAAGTAAGAGTGTGGGGGGAGGCTCTACTACATTCAAGTCAGCTACAGTTGCTGTGGTTGGAGATGGCTTCATAGCTCGTGGCATGACATTCCGTAACACCGCTGGAGCATCCAACCACCAGGCAGTGGCTCTACGATCCGGGTCTGACCTCTCAGTGTATTACCAATGTAGCTTTGAAGGGTACCAAGATACTCTCTACACTTACTCTGAGCGACAATTCTATAGAGAATGCGATATATATGGGACTGTGGATTTCATATTTGGAAATGCTGCAGTTGTGTTTCAAAATTGCAACATTTATGCCCGTAACCCTCCCAACAAGATCAACACAGTAACTGCCCAAGGCAGGACTGACCCTAACCAAAACACTGGAATTTCCATACACGACTGTAAGAATATTCTCGGACCGTCTTCCTAA 459 46.19 MLLGDGIGKTIVTGSKSVGGGSTTFKSATVAVVGDGFIARGMTFRNTAGASNHQAVALRSGSDLSVYYQCSFEGYQDTLYTYSERQFYRECDIYGTVDFIFGNAAVVFQNCNIYARNPPNKINTVTAQGRTDPNQNTGISIHDCKNILGPSS* 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15391214 15393158 - Vvi6g966 Vvi6g966 788543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi6g966 152 PANTHER PECTINESTERASE 1 145 - -
Vvi6g966 152 PANTHER PECTINESTERASE 1 145 - -
Vvi6g966 152 ProSitePatterns Pectinesterase signature 2. 93 102 IPR033131 -
Vvi6g966 152 Gene3D - 1 151 IPR012334 -
Vvi6g966 152 SUPERFAMILY Pectin lyase-like 1 144 IPR011050 -
Vvi6g966 152 Pfam Pectinesterase 1 145 IPR000070 GO:0030599|GO:0042545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi6g966 K01051 - vvi:100263290 291.582