Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi7g1006 | ATGGAAACTCTCCCCTTTCGTGGAGTCCCTTCACTGAGTTGTGCAAGGAGACGAGTCAACAATTCGTTTGAGCCCTTCCACCATCGGACCCTCTTCTTTTATAATCTCTCTCTTCCCAAATCCCTCTTTCCTCCTCTCAATTTCCCTCTTCTTCCCCGCCACCGCGCTCTCCAATTCGTCGCCAAGGCGGAGGATTCTCATCACCACCACCACCACCCCCACAATGATCATCACCACGATGACCACCACCACCATCACGGCCACGGCCACGGCCACCACCATCATCATCATGGCAGTGGATCGACGCTGAGTAGAACGCAGGAATCTTTTCTTCGAATTGCGAAAGCGATTAGGTGGGCAGACTTGGCGGATTTCTTAAGGGAGAATCTGCATTTGTGCTGCTGTTCCACGGGTCTGTTTCTAGCGGCTGCGGCTTGCCCGTATTTGATTCCGAAGCCGGCCGTGAAGCCTCTACAGAATGCCTTCATTTTCGTTGCTTTTCCTCTCGTTGGGGTCTCAGCATCTCTTGATGCTCTTATTGATATTACTGGTGGAAAGGTAAACATTCATGTACTAATGGCTCTTGCAGCCTTCGCATCAGTATTTATGGGAAACCCATTGGAAGGTGGTTTACTTCTTGCAATGTTTAATCTGGCTCATATTGCTGAAGAGTATTTCACCAGCCGCTCAGTGGTGGATGTTAAGGAGTTGAAGGAAAATTATCCAGATTTTGCTCTTGTTTTGGAAGTGAATAATAATAAACCGCCTAATTTCTCTCATTTGGCATACAAAAAGGTCCCTGTGCATGATGTAGAAGTGGGTTCATATATCTTGGTCAAAGATGGTGAGTTTGTGCCAGTTGATTGTGAAGTTTTCCAAGGTAGATCAACAATTACTATAGAGCATTTGACTGGGGAAATGAAACCAGTAGAGAGGACAGTTGGGGAAAGGATTCCAGGTGGAGCACATAACTTGAGTGGTATGATGATAGTGAAGGCAACAAAGACATGGAAGGAGTCTACATTGAGCAGGATTGTACAATTGACTGAAGAAGCACAACTAAATAAGCCAAAGCTTCAAAGGTGGCTGGATGAATTTGGGGACCATTACAGCAAGGTGGTTGTAGTTCTATCAATTGCTGTTGCCTTCATTGGACCACTTCTTTTCAAGTGGCCTTTCATTAGTACTTCAGTTTGCAGAGGATCAGTTTACAGAGCGTTGGGGCTCATGGTGGCAGCATCTCCTTGTGCATTAGCTGTTGCTCCATTGGCATATGCTATTGCCATTAGTGCCTGTGCAAGAAAGGGTATATTGCTGAAAGGTGGGCATGTTTTAGACGCTCTAGCTTCTTGCCACACTATTGCTTTTGATAAAACTGGGACTTTGACAAGTGGAAAACTAACATTCAAAGCAATTGAACCAATCTATGGACATGGGGTCAGAGCCTATAGATCAAAATTTGTATCTTGTTGTATCCCTAGTTGTGAAATAGAAGCCCTTGCTGTTGCTGCTGCCATGGAGAGGGGTACTACTCATCCTATTGGAAGAGCTGTTGTGGACCATTGTGTGGGCAAAGATCTTCCACCTGTGGCTGTTGAAAATTTTGAGTCTTTACCAGGCAGAGGCCTTTCTGCTACACTGACTAGCATTGAGTCAGGAATTGGAGGAGGGGAACTGTTGAAAGCATCAATTGGATCCCTAGAGTATATCCTTTCACTTTGTAAATCTGAAGATGAGTTGAAAAAGATCAAGGAAGCTATGAGCACATCGTCTTATGGGAGTGACTTTGTTCATGCTGCTCTCTCTGTTAATAAAAAGGTAACACTGCTTCATTTTGAGGATGAACCTCGACCTGGGGTATTAGATGTCATACTGGCATTACAGGATCAAGCAAAGCTCCGTGTAATGATGCTAACTGGTGACCATGAGTCAAGTGCATGGAGAGTTGCAAATGCTGTGGGTATCAAGGAGGTTTACTGCAGCCTGAAACCTGAGGATAAGCTCAATCATGTGAAGAGTATATCAAGGGAGGCAGGTGGAGGTCTGATAATGGTAGGTGATGGCATTAATGATGCACCTGCACTAGCTGCTGCTACCGTGGGTATTGTGCTTGCTCAACGCGCTAGTGGAACTGCAATTGCTGTTGCTGATGTGCTATTGCTACGGGACAATATTTCTGCTGTTCCATTCTGTGTATCTAAATCTCGTCAGACAACCTCCTTGGTCAAACAAAATGTGGCCCTTGCTTTATCATGCATTCTTCTGGCCTCTCTCCCATCTGTGTTGGGGTTTCTACCACTTTGGTTAACGGTTCTTTTGCATGAAGGCGGTACTCTTCTTGTCTGCCTCAATTCTGTACGCGCTCTGAATGAGCCCACGTGGTCCTGGAAGCAAGATCTCGTACCAGTGGTTGATAAATTCAAGTCCACAATTATGTTTTTAAGAAGACATACCACCACCTCAAGCAGCACAAGGGCTGCTCCCCTATAA | 2490 | 45.42 | METLPFRGVPSLSCARRRVNNSFEPFHHRTLFFYNLSLPKSLFPPLNFPLLPRHRALQFVAKAEDSHHHHHHPHNDHHHDDHHHHHGHGHGHHHHHHGSGSTLSRTQESFLRIAKAIRWADLADFLRENLHLCCCSTGLFLAAAACPYLIPKPAVKPLQNAFIFVAFPLVGVSASLDALIDITGGKVNIHVLMALAAFASVFMGNPLEGGLLLAMFNLAHIAEEYFTSRSVVDVKELKENYPDFALVLEVNNNKPPNFSHLAYKKVPVHDVEVGSYILVKDGEFVPVDCEVFQGRSTITIEHLTGEMKPVERTVGERIPGGAHNLSGMMIVKATKTWKESTLSRIVQLTEEAQLNKPKLQRWLDEFGDHYSKVVVVLSIAVAFIGPLLFKWPFISTSVCRGSVYRALGLMVAASPCALAVAPLAYAIAISACARKGILLKGGHVLDALASCHTIAFDKTGTLTSGKLTFKAIEPIYGHGVRAYRSKFVSCCIPSCEIEALAVAAAMERGTTHPIGRAVVDHCVGKDLPPVAVENFESLPGRGLSATLTSIESGIGGGELLKASIGSLEYILSLCKSEDELKKIKEAMSTSSYGSDFVHAALSVNKKVTLLHFEDEPRPGVLDVILALQDQAKLRVMMLTGDHESSAWRVANAVGIKEVYCSLKPEDKLNHVKSISREAGGGLIMVGDGINDAPALAAATVGIVLAQRASGTAIAVADVLLLRDNISAVPFCVSKSRQTTSLVKQNVALALSCILLASLPSVLGFLPLWLTVLLHEGGTLLVCLNSVRALNEPTWSWKQDLVPVVDKFKSTIMFLRRHTTTSSSTRAAPL* | 830 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 16179865 | 16207211 | + | Vvi7g1006 | Vvi7g1006 | 789872 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi7g1006 | 829 | SFLD | p-type atpase | 437 | 738 | IPR044492 | - | |
Vvi7g1006 | 829 | Gene3D | - | 228 | 353 | - | - | |
Vvi7g1006 | 829 | Pfam | haloacid dehalogenase-like hydrolase | 453 | 698 | - | - | |
Vvi7g1006 | 829 | MobiDBLite | consensus disorder prediction | 62 | 102 | - | - | |
Vvi7g1006 | 829 | PANTHER | PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 | 29 | 821 | - | - | |
Vvi7g1006 | 829 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 254 | 476 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Vvi7g1006 | 829 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 588 | 765 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Vvi7g1006 | 829 | Pfam | E1-E2 ATPase | 263 | 435 | - | - | |
Vvi7g1006 | 829 | TIGRFAM | ATPase-IB_hvy: heavy metal translocating P-type ATPase | 189 | 787 | IPR027256 | GO:0006812|GO:0016021|GO:0019829 | |
Vvi7g1006 | 829 | CDD | P-type_ATPase_HM | 139 | 787 | - | - | |
Vvi7g1006 | 829 | MobiDBLite | consensus disorder prediction | 71 | 100 | - | - | |
Vvi7g1006 | 829 | PRINTS | H+-transporting ATPase (proton pump) signature | 685 | 701 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Vvi7g1006 | 829 | PRINTS | H+-transporting ATPase (proton pump) signature | 717 | 742 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Vvi7g1006 | 829 | PANTHER | CADMIUM/ZINC-TRANSPORTING ATPASE HMA1, CHLOROPLASTIC-RELATED | 29 | 821 | - | - | |
Vvi7g1006 | 829 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 191 | 768 | IPR023298 | - | |
Vvi7g1006 | 829 | PRINTS | P-type cation-transporting ATPase superfamily signature | 299 | 313 | - | - | |
Vvi7g1006 | 829 | PRINTS | P-type cation-transporting ATPase superfamily signature | 455 | 469 | - | - | |
Vvi7g1006 | 829 | PRINTS | P-type cation-transporting ATPase superfamily signature | 608 | 619 | - | - | |
Vvi7g1006 | 829 | PRINTS | P-type cation-transporting ATPase superfamily signature | 631 | 641 | - | - | |
Vvi7g1006 | 829 | PRINTS | P-type cation-transporting ATPase superfamily signature | 685 | 704 | - | - | |
Vvi7g1006 | 829 | PRINTS | P-type cation-transporting ATPase superfamily signature | 709 | 721 | - | - | |
Vvi7g1006 | 829 | SUPERFAMILY | HAD-like | 453 | 785 | IPR036412 | - | |
Vvi7g1006 | 829 | SFLD | C1.7: P-type atpase like | 437 | 738 | - | - | |
Vvi7g1006 | 829 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 457 | 463 | IPR018303 | - | |
Vvi7g1006 | 829 | SUPERFAMILY | Calcium ATPase, transduction domain A | 264 | 348 | IPR008250 | - | |
Vvi7g1006 | 829 | Gene3D | - | 448 | 736 | IPR023214 | - | |
Vvi7g1006 | 829 | Gene3D | - | 466 | 616 | IPR023299 | GO:0000166 |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi7g1006 | K01534 | - | vvi:100255947 | 1507.27 |