Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1006 ATGGAAACTCTCCCCTTTCGTGGAGTCCCTTCACTGAGTTGTGCAAGGAGACGAGTCAACAATTCGTTTGAGCCCTTCCACCATCGGACCCTCTTCTTTTATAATCTCTCTCTTCCCAAATCCCTCTTTCCTCCTCTCAATTTCCCTCTTCTTCCCCGCCACCGCGCTCTCCAATTCGTCGCCAAGGCGGAGGATTCTCATCACCACCACCACCACCCCCACAATGATCATCACCACGATGACCACCACCACCATCACGGCCACGGCCACGGCCACCACCATCATCATCATGGCAGTGGATCGACGCTGAGTAGAACGCAGGAATCTTTTCTTCGAATTGCGAAAGCGATTAGGTGGGCAGACTTGGCGGATTTCTTAAGGGAGAATCTGCATTTGTGCTGCTGTTCCACGGGTCTGTTTCTAGCGGCTGCGGCTTGCCCGTATTTGATTCCGAAGCCGGCCGTGAAGCCTCTACAGAATGCCTTCATTTTCGTTGCTTTTCCTCTCGTTGGGGTCTCAGCATCTCTTGATGCTCTTATTGATATTACTGGTGGAAAGGTAAACATTCATGTACTAATGGCTCTTGCAGCCTTCGCATCAGTATTTATGGGAAACCCATTGGAAGGTGGTTTACTTCTTGCAATGTTTAATCTGGCTCATATTGCTGAAGAGTATTTCACCAGCCGCTCAGTGGTGGATGTTAAGGAGTTGAAGGAAAATTATCCAGATTTTGCTCTTGTTTTGGAAGTGAATAATAATAAACCGCCTAATTTCTCTCATTTGGCATACAAAAAGGTCCCTGTGCATGATGTAGAAGTGGGTTCATATATCTTGGTCAAAGATGGTGAGTTTGTGCCAGTTGATTGTGAAGTTTTCCAAGGTAGATCAACAATTACTATAGAGCATTTGACTGGGGAAATGAAACCAGTAGAGAGGACAGTTGGGGAAAGGATTCCAGGTGGAGCACATAACTTGAGTGGTATGATGATAGTGAAGGCAACAAAGACATGGAAGGAGTCTACATTGAGCAGGATTGTACAATTGACTGAAGAAGCACAACTAAATAAGCCAAAGCTTCAAAGGTGGCTGGATGAATTTGGGGACCATTACAGCAAGGTGGTTGTAGTTCTATCAATTGCTGTTGCCTTCATTGGACCACTTCTTTTCAAGTGGCCTTTCATTAGTACTTCAGTTTGCAGAGGATCAGTTTACAGAGCGTTGGGGCTCATGGTGGCAGCATCTCCTTGTGCATTAGCTGTTGCTCCATTGGCATATGCTATTGCCATTAGTGCCTGTGCAAGAAAGGGTATATTGCTGAAAGGTGGGCATGTTTTAGACGCTCTAGCTTCTTGCCACACTATTGCTTTTGATAAAACTGGGACTTTGACAAGTGGAAAACTAACATTCAAAGCAATTGAACCAATCTATGGACATGGGGTCAGAGCCTATAGATCAAAATTTGTATCTTGTTGTATCCCTAGTTGTGAAATAGAAGCCCTTGCTGTTGCTGCTGCCATGGAGAGGGGTACTACTCATCCTATTGGAAGAGCTGTTGTGGACCATTGTGTGGGCAAAGATCTTCCACCTGTGGCTGTTGAAAATTTTGAGTCTTTACCAGGCAGAGGCCTTTCTGCTACACTGACTAGCATTGAGTCAGGAATTGGAGGAGGGGAACTGTTGAAAGCATCAATTGGATCCCTAGAGTATATCCTTTCACTTTGTAAATCTGAAGATGAGTTGAAAAAGATCAAGGAAGCTATGAGCACATCGTCTTATGGGAGTGACTTTGTTCATGCTGCTCTCTCTGTTAATAAAAAGGTAACACTGCTTCATTTTGAGGATGAACCTCGACCTGGGGTATTAGATGTCATACTGGCATTACAGGATCAAGCAAAGCTCCGTGTAATGATGCTAACTGGTGACCATGAGTCAAGTGCATGGAGAGTTGCAAATGCTGTGGGTATCAAGGAGGTTTACTGCAGCCTGAAACCTGAGGATAAGCTCAATCATGTGAAGAGTATATCAAGGGAGGCAGGTGGAGGTCTGATAATGGTAGGTGATGGCATTAATGATGCACCTGCACTAGCTGCTGCTACCGTGGGTATTGTGCTTGCTCAACGCGCTAGTGGAACTGCAATTGCTGTTGCTGATGTGCTATTGCTACGGGACAATATTTCTGCTGTTCCATTCTGTGTATCTAAATCTCGTCAGACAACCTCCTTGGTCAAACAAAATGTGGCCCTTGCTTTATCATGCATTCTTCTGGCCTCTCTCCCATCTGTGTTGGGGTTTCTACCACTTTGGTTAACGGTTCTTTTGCATGAAGGCGGTACTCTTCTTGTCTGCCTCAATTCTGTACGCGCTCTGAATGAGCCCACGTGGTCCTGGAAGCAAGATCTCGTACCAGTGGTTGATAAATTCAAGTCCACAATTATGTTTTTAAGAAGACATACCACCACCTCAAGCAGCACAAGGGCTGCTCCCCTATAA 2490 45.42 METLPFRGVPSLSCARRRVNNSFEPFHHRTLFFYNLSLPKSLFPPLNFPLLPRHRALQFVAKAEDSHHHHHHPHNDHHHDDHHHHHGHGHGHHHHHHGSGSTLSRTQESFLRIAKAIRWADLADFLRENLHLCCCSTGLFLAAAACPYLIPKPAVKPLQNAFIFVAFPLVGVSASLDALIDITGGKVNIHVLMALAAFASVFMGNPLEGGLLLAMFNLAHIAEEYFTSRSVVDVKELKENYPDFALVLEVNNNKPPNFSHLAYKKVPVHDVEVGSYILVKDGEFVPVDCEVFQGRSTITIEHLTGEMKPVERTVGERIPGGAHNLSGMMIVKATKTWKESTLSRIVQLTEEAQLNKPKLQRWLDEFGDHYSKVVVVLSIAVAFIGPLLFKWPFISTSVCRGSVYRALGLMVAASPCALAVAPLAYAIAISACARKGILLKGGHVLDALASCHTIAFDKTGTLTSGKLTFKAIEPIYGHGVRAYRSKFVSCCIPSCEIEALAVAAAMERGTTHPIGRAVVDHCVGKDLPPVAVENFESLPGRGLSATLTSIESGIGGGELLKASIGSLEYILSLCKSEDELKKIKEAMSTSSYGSDFVHAALSVNKKVTLLHFEDEPRPGVLDVILALQDQAKLRVMMLTGDHESSAWRVANAVGIKEVYCSLKPEDKLNHVKSISREAGGGLIMVGDGINDAPALAAATVGIVLAQRASGTAIAVADVLLLRDNISAVPFCVSKSRQTTSLVKQNVALALSCILLASLPSVLGFLPLWLTVLLHEGGTLLVCLNSVRALNEPTWSWKQDLVPVVDKFKSTIMFLRRHTTTSSSTRAAPL* 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16179865 16207211 + Vvi7g1006 Vvi7g1006 789872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1006 829 SFLD p-type atpase 437 738 IPR044492 -
Vvi7g1006 829 Gene3D - 228 353 - -
Vvi7g1006 829 Pfam haloacid dehalogenase-like hydrolase 453 698 - -
Vvi7g1006 829 MobiDBLite consensus disorder prediction 62 102 - -
Vvi7g1006 829 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 29 821 - -
Vvi7g1006 829 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 254 476 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi7g1006 829 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 588 765 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi7g1006 829 Pfam E1-E2 ATPase 263 435 - -
Vvi7g1006 829 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 189 787 IPR027256 GO:0006812|GO:0016021|GO:0019829
Vvi7g1006 829 CDD P-type_ATPase_HM 139 787 - -
Vvi7g1006 829 MobiDBLite consensus disorder prediction 71 100 - -
Vvi7g1006 829 PRINTS H+-transporting ATPase (proton pump) signature 685 701 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi7g1006 829 PRINTS H+-transporting ATPase (proton pump) signature 717 742 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi7g1006 829 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA1, CHLOROPLASTIC-RELATED 29 821 - -
Vvi7g1006 829 SUPERFAMILY Calcium ATPase, transmembrane domain M 191 768 IPR023298 -
Vvi7g1006 829 PRINTS P-type cation-transporting ATPase superfamily signature 299 313 - -
Vvi7g1006 829 PRINTS P-type cation-transporting ATPase superfamily signature 455 469 - -
Vvi7g1006 829 PRINTS P-type cation-transporting ATPase superfamily signature 608 619 - -
Vvi7g1006 829 PRINTS P-type cation-transporting ATPase superfamily signature 631 641 - -
Vvi7g1006 829 PRINTS P-type cation-transporting ATPase superfamily signature 685 704 - -
Vvi7g1006 829 PRINTS P-type cation-transporting ATPase superfamily signature 709 721 - -
Vvi7g1006 829 SUPERFAMILY HAD-like 453 785 IPR036412 -
Vvi7g1006 829 SFLD C1.7: P-type atpase like 437 738 - -
Vvi7g1006 829 ProSitePatterns E1-E2 ATPases phosphorylation site. 457 463 IPR018303 -
Vvi7g1006 829 SUPERFAMILY Calcium ATPase, transduction domain A 264 348 IPR008250 -
Vvi7g1006 829 Gene3D - 448 736 IPR023214 -
Vvi7g1006 829 Gene3D - 466 616 IPR023299 GO:0000166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1006 K01534 - vvi:100255947 1507.27