Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1008 ATGCTCGACACCTGCTCTCGTGTCATCGCTTTGTCTCTCTCAAACTTTCAGCTTCTGGGTTCGATTCCAGATGATCTGGGCATGATCGAACACCTTCGGAATCTTGATCTCTCCAACAATGCTTTCAATGGGTCCCTTCCTCTATCACTCTTCAACGCGTCTGAGCTTCAGGTAATGGATTTGTCCAACAATTTGATCTCCGGTGAGCTTCCGGAGGTTGACGGAGGGTTAGCAAGTCTTCAATTGCTTAACCTCTCGGACAATGCCTTGGCGGGAAGGATACCAGACTACCTGAAAATTCCAGAAGCCAATGTTCTCTATAATCAGCAAACGAAATCTTTTTCCGGAAATACTGGTCTATGCGGGAAACCGCTCAAGGCTCCGTCAATGCCCAAGACAATAGACTCAACCCCAGTGACCTCGCCCGGAACGACAAATGGGTCGCGGAAGCAAGATGAAAACGGGCTCAGACCAGCGACAATTGTCGGAATCGTCCTGGGGGACATTGTGGGAGTGGGAATTCTGGCTGTGATCTTCTTATACGACATTTGGTCATCGTCTTCGTCTTCGTCGGAGACCAGAGGAGTCACAGCATGGTCGTGCCTGCCAAAAAGAGGAGACGAAGAAGACAGCACCGAAACCACAGGCTCCGATGGCGAAGAAGAACAGACCATGCAAACCGTGACCGTGGACGGTGAGAAAGAGCTTGAGCTAGAGACTCTCCTCAAGGCTTCGGCCTACATACTGGGCGCCACGGGTTCAAGCATAATGTACAAGGCTGTGCTCGAAGATGGCACCACTCTCGCAGTCCGAAGAATTGGCGAAAGCGGCGTGGAGAGGTTCAGAGACTTCGAGAACCAGGTAAAAGTCATAGCCAAGCTGGTGCACCCCAACCTGGTTCGCATCAGAGGCTTCTATTGGGGGGTCGATGAGAAGCTTGTCATCTACGATTTCGTCCCCAACGGCAGTCTCGCCAGTGCCCGTTACAGGAAAGTAGGCTCATCTCCTTGTCACATGCCATGGGAAGTCCGACTCAAAGTTGCCAAAGGTGCAGCCAGGGGCTTAACCTATCTCCACGACAAGAAGCATGTGCATGGAAATCTCAAGCCTAGCAACATCCTTCTGGGCATCGACATGGAGCCCAAAATCGGCGATTTTGGCCTGGAGAGGCTCGTCTCCGGCGAAACTAGCTACAAAGCTGGTGGATCGGCCCGGAATTTCGGGAGCAAGAGATCGACAGCCTCCCGCGACAGTTTCCAAGACATGCCAGTTGGGCCCAGCCCCAGCCCGAGTCCAAGCTCACTGGGCGTGTCCCCCTACCACGCCCCCGAGTCGCTCCGGAGCCTCAAGCCCAACCCGAAATGGGATGTGTTCTCATTTGGGGTCATACTGCTGGAGCTGCTCACTGGGAAGGTTATCGTCTCAGATGATTTGGGCCTTGGATTAGCGTCGGAGGACAAGGGCCGGGTTCTGAGAATGGCTGACGCGGCAATTCGAGCTGACCTGGAAGGCAAAGAGGATGCCCTGCTGGCCTGTTTCAAGTTAGGGTTCAGTTGCGTGTCGCCAGCCCCTCAAAAAAGACCATCCATGAAAGAAGCCGTCCAAGTTCTGGAGAAAATCCCGTCTTCTTCTTCGTCTTCTTCTTATTATGCCCACTAA 1659 53.04 MLDTCSRVIALSLSNFQLLGSIPDDLGMIEHLRNLDLSNNAFNGSLPLSLFNASELQVMDLSNNLISGELPEVDGGLASLQLLNLSDNALAGRIPDYLKIPEANVLYNQQTKSFSGNTGLCGKPLKAPSMPKTIDSTPVTSPGTTNGSRKQDENGLRPATIVGIVLGDIVGVGILAVIFLYDIWSSSSSSSETRGVTAWSCLPKRGDEEDSTETTGSDGEEEQTMQTVTVDGEKELELETLLKASAYILGATGSSIMYKAVLEDGTTLAVRRIGESGVERFRDFENQVKVIAKLVHPNLVRIRGFYWGVDEKLVIYDFVPNGSLASARYRKVGSSPCHMPWEVRLKVAKGAARGLTYLHDKKHVHGNLKPSNILLGIDMEPKIGDFGLERLVSGETSYKAGGSARNFGSKRSTASRDSFQDMPVGPSPSPSPSSLGVSPYHAPESLRSLKPNPKWDVFSFGVILLELLTGKVIVSDDLGLGLASEDKGRVLRMADAAIRADLEGKEDALLACFKLGFSCVSPAPQKRPSMKEAVQVLEKIPSSSSSSSYYAH* 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16228569 16231247 + Vvi7g1008 Vvi7g1008 789874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1008 552 ProSiteProfiles Protein kinase domain profile. 243 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1008 552 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 98 - -
Vvi7g1008 552 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 99 128 - -
Vvi7g1008 552 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 130 543 - -
Vvi7g1008 552 SUPERFAMILY L domain-like 3 98 - -
Vvi7g1008 552 MobiDBLite consensus disorder prediction 125 154 - -
Vvi7g1008 552 Gene3D Ribonuclease Inhibitor 1 131 IPR032675 -
Vvi7g1008 552 MobiDBLite consensus disorder prediction 399 443 - -
Vvi7g1008 552 MobiDBLite consensus disorder prediction 133 153 - -
Vvi7g1008 552 Pfam Leucine rich repeat 31 90 IPR001611 GO:0005515
Vvi7g1008 552 Pfam Protein kinase domain 249 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1008 552 MobiDBLite consensus disorder prediction 399 424 - -
Vvi7g1008 552 Gene3D Transferase(Phosphotransferase) domain 1 319 550 - -
Vvi7g1008 552 Gene3D Phosphorylase Kinase; domain 1 210 318 - -
Vvi7g1008 552 SUPERFAMILY Protein kinase-like (PK-like) 248 541 IPR011009 -
Vvi7g1008 552 PANTHER BNAC07G16060D PROTEIN 6 98 - -
Vvi7g1008 552 PANTHER BNAC07G16060D PROTEIN 99 128 - -
Vvi7g1008 552 PANTHER BNAC07G16060D PROTEIN 130 543 - -
Vvi7g1008 552 MobiDBLite consensus disorder prediction 188 226 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g620 Vvi7g1008 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76733 PF00069 Pkinase 1.00E-29 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1008 - - vvi:100261029 834.328