Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1015 ATGCCAGCTGAGAGTGTTGTAAGCACCTCCACAACTACACAACCTGGTGTTCTCGAATCCTTCACAAAAGGGTTAGTTGACTCATCAAAGAGTGCAGTGAAGGCTGTGCAGGTCAAGGCACGCCATATTGTCTCTCAAAACAAACGAAGATACCAGGAAGGAGAATTTGATTTGGATATGACTTACATCACTGAGAACATAATTGCAATGGGGTTTCCTGCTGGTGATATGAGCTCTGGGTTTTTAGGATTTATTGAGGGATTTTATCGAAATCACATGGAAGAAGTGATCAAGTTTTTTGAAACTCATCACAAGGGCAAATATAAGGTATACAATCTTTGTTCAGAGCGGCTCTACGATGCATCACTCTTTGAGGGAAAGGTTGCATCCTTCCCCTTTGATGACCATAACTGCCCCCCTATTCAACTCATAACTTCATTTTGTCAAAGTGCATACTCATGGTTGAAGCAAGATATTGAGAATGTGGTGGTTGTTCATTGCAAAGCTGGGATGGCAAGGACAGGACTAATGCTTTCAAGCCTTCTTTTATTCCTAAAGTTCTTCCCGACAGCTGAGGAGTCCATCAACTATTACAACCAAAAAAGATGCTTAGATGGGAAGGGTCTAGTTCTCCCAAGTCAGATTAGGTATGTCAAATATTTTGAGCGCATCTTAACACACTTCAATGGTCAAAATCCTCCTGGACGCAGGTGCATGCTTAGAGGGTTTCGGCTTCATAGGTGCCCTTCCTGGTTTAGGCCCTCCATTACAGTCTCTGATCATAATGGAATTTTATTCTCAACAAGAAAGCATCCAAAAACCAAGGATCTAATGCCAGAAGACTTTTGGATCAGTGCAGCAAAGAAAGGGATTGTGGTCTTTGCTCTACCGAGGGAGCCTGGTCTGGCAGAGTTGGCTGGAGACTTCAAGTTCCATTTTCATGACAGTGAAGGAGATTTTTACTGTTGGTTAAATACGACAATGACAGAAAACAGAAAAATTTTGAGCACCTATGATCTTGATGGATTCGAAAAGAGGAAACTGCCTTCACCTGGATTCCAGGTTGAAGTTGTGATGATAGATTATGACGGAACCATTCAGACAAGGTTTAAATCTGATTCAAGCAGGAACGGTATGAGCGGCGAAGTGGTAAGGGAGGCAGGAAACCCATTGAATTCATTGCATTGGATTTTTTTTTTTTCAAAAAAAAAACCAAAAAGAATTCCTTTCATTCTTTCTGTGAAATCTTTAGACTTTGAAGAAAGTATCTATTGA 1275 41.1 MPAESVVSTSTTTQPGVLESFTKGLVDSSKSAVKAVQVKARHIVSQNKRRYQEGEFDLDMTYITENIIAMGFPAGDMSSGFLGFIEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIQLITSFCQSAYSWLKQDIENVVVVHCKAGMARTGLMLSSLLLFLKFFPTAEESINYYNQKRCLDGKGLVLPSQIRYVKYFERILTHFNGQNPPGRRCMLRGFRLHRCPSWFRPSITVSDHNGILFSTRKHPKTKDLMPEDFWISAAKKGIVVFALPREPGLAELAGDFKFHFHDSEGDFYCWLNTTMTENRKILSTYDLDGFEKRKLPSPGFQVEVVMIDYDGTIQTRFKSDSSRNGMSGEVVREAGNPLNSLHWIFFFSKKKPKRIPFILSVKSLDFEESIY* 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16284266 16290893 - Vvi7g1015 Vvi7g1015 789881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1015 424 CDD PTP_PTEN 59 224 IPR045101 GO:0016791
Vvi7g1015 424 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 3 384 - -
Vvi7g1015 424 ProSitePatterns Tyrosine specific protein phosphatases active site. 165 175 IPR016130 GO:0016311|GO:0016791
Vvi7g1015 424 ProSiteProfiles Phosphatase tensin-type domain profile. 49 228 IPR029023 -
Vvi7g1015 424 ProSiteProfiles C2 tensin-type domain profile. 235 362 IPR014020 -
Vvi7g1015 424 SMART PTEN_C2_2 233 361 IPR014020 -
Vvi7g1015 424 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 163 202 IPR000387 GO:0016311|GO:0016791
Vvi7g1015 424 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A-LIKE 3 384 - -
Vvi7g1015 424 Gene3D Protein tyrosine phosphatase superfamily 34 231 IPR029021 -
Vvi7g1015 424 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 62 230 IPR029021 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g606 Vvi7g1015 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1015 K01110 - vvi:100259289 776.548