Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1024 ATGAAATCAGATTTTAACATTCCTTCTCAATTGAAACTTACAGGATGGAGGAGAATGAGCTTTGTGTTGCCATTACCGTTCTTCATCTTTCTGGAAGAGAGCAGCAGGGTTGTGCGTTTCGACACTCAAGGGTTTGGTCTCAGAGGCTACTTCGCTCCCAACACCTTGACTCGTCTTGATCAGCTCCGAGTTCTGAGCCTCCATAATAACTCGCTCTCCGGACCCATTCCTGACCTGGCCGCACTCGTCAACCTCAAGTCGCTGTTTTTGGACCACAACTCCTTTTCTGGGTATTTCCCGCCGTCTATTCTCTCCCTTCACCGGCTTCGTATTCTTGATCTTTCTCACAACAATCTAACCGGTTTAATCCCGGTGGAATTGTCTGGGTTGGACCGGCTCAGCTCTCTCCGACTTGAATGGAACCAGTTCAACGGGACAGTTCCTCCGTTGAACCAGTCCTCGCTTCTAATCTTCAATGTCTCCGGCAACAACCTCACCGGGCCAATACCGGTAACCCCTACTCTCTCCCGCTTTGGGGTTTCTTCGTTTTCATGGAATCCTAATCTATGCGGTGAGATTATAAACAAGCAGTGCAGGTCATCTTCCCCATTTTTCGAGTCCCCCGGTGTCCGTGCCGGTGCCGCTCCGTCACCGACACCACTCTGGCAGAGCACACAGGCGCAAGGGGTTGTTCTATCGACTCCATCTTCAAAGAAACACGTAGGAACCCCCTTAATTCTAGGGTTTGTAATAGGGATGGGAGTTCTTATTGTGTCCCTTGTTTGCCTGTTTGCGTTGGTATGCAAACACAGTAGAAAAACCCCAAAATCAAATCCAATGCCGGAACCAAAAGCAGAAGCAGAAGCAGAACCAGAGCCAGTAATGGCGGCTTTAGACATGGTTCAACAAGTAGTTGGGAAAAGTGGGAACCTGGTGTTCTGCGTAGGTGAACCACAGTTGTATAACCTGGACCAGCTAATGAGGGCTTCAGCAGAAATGCTTGGGCGGGGTTCAATAGGAACTACATATAAAGCCGTGTTGGATAATCAATTGATCGTTTCAGTGAAGAGGCTTGATGCAAGCAAGACAGCCATTACAAGCGGTGAAGTGTTTGAGCGGCACATGGAGTCTGTGGGAGGGCTTCGCCACCCAAATTTGGTTCCAATTAGAGCGTATTTTCAGGCCAAGGAGGAAAGGCTTGTCATCTATGATTATCAACCGAATGGGAGTCTCTTCTCTCTCATTCACGTGACGAGAATGATACATGCATCAAATATTAAAATCCTTTTTCCCAAATTCTTGATCAAGATGAGGCTCCCAACAGCAGTTCAAGATCAACCAGGGCAAAGCCTCTCCACTGGACATCATGCTTAA 1374 48.03 MKSDFNIPSQLKLTGWRRMSFVLPLPFFIFLEESSRVVRFDTQGFGLRGYFAPNTLTRLDQLRVLSLHNNSLSGPIPDLAALVNLKSLFLDHNSFSGYFPPSILSLHRLRILDLSHNNLTGLIPVELSGLDRLSSLRLEWNQFNGTVPPLNQSSLLIFNVSGNNLTGPIPVTPTLSRFGVSSFSWNPNLCGEIINKQCRSSSPFFESPGVRAGAAPSPTPLWQSTQAQGVVLSTPSSKKHVGTPLILGFVIGMGVLIVSLVCLFALVCKHSRKTPKSNPMPEPKAEAEAEPEPVMAALDMVQQVVGKSGNLVFCVGEPQLYNLDQLMRASAEMLGRGSIGTTYKAVLDNQLIVSVKRLDASKTAITSGEVFERHMESVGGLRHPNLVPIRAYFQAKEERLVIYDYQPNGSLFSLIHVTRMIHASNIKILFPKFLIKMRLPTAVQDQPGQSLSTGHHA* 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16337942 16345589 + Vvi7g1024 Vvi7g1024 789890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1024 457 Pfam Protein kinase domain 331 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1024 457 SUPERFAMILY L domain-like 15 179 - -
Vvi7g1024 457 SUPERFAMILY Protein kinase-like (PK-like) 332 417 IPR011009 -
Vvi7g1024 457 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 35 423 - -
Vvi7g1024 457 ProSiteProfiles Leucine-rich repeat profile. 61 83 IPR001611 GO:0005515
Vvi7g1024 457 ProSiteProfiles Leucine-rich repeat profile. 108 129 IPR001611 GO:0005515
Vvi7g1024 457 ProSiteProfiles Protein kinase domain profile. 328 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1024 457 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 35 423 - -
Vvi7g1024 457 Gene3D Phosphorylase Kinase; domain 1 322 405 - -
Vvi7g1024 457 Gene3D Ribonuclease Inhibitor 9 152 IPR032675 -
Vvi7g1024 457 Gene3D Ribonuclease Inhibitor 153 200 IPR032675 -
Vvi7g1024 457 Pfam Leucine rich repeat 84 143 IPR001611 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g1024 Vvi18g729 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76734 PF00069 Pkinase 1.20E-09 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1024 - - vvi:100264683 727.243