Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1029 ATGGAGGGAGGACAGGAGTGTTGTTCGAGCAGAGAGACGAGGAAGAGGGTGACGGGGCAAGGTGAGAAGCGGTACAAGGGGATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCTGAGATTAGAGAACCCAACAAGAGGTCACGCATATGGCTGGGCTCCTACTCCACACCGGTGGCCGCTGCCCGTGCTTACGACACCGCCGTCTTTCACCTGAGAGGACCGTCGGCGAGGCTCAACTTCCCGGAGTACCTGGTGGGAGAAGGTGGGCTCCACGACACCTCCGCTGCGTCTATACGCAAAAAAGCTACGGAGGTGGGGGCGACAGTAGACGCTATAGAATGTGCCAGGACGGCTTCCAACCAATACAAATCCTGCGCCTTCTCTGAGAAACCCGACCTCAATAAAGAACCGGATCCTGAAAATTCGGATGTTGACGATGACCACCACTATCATCTCTGA 459 56.21 MEGGQECCSSRETRKRVTGQGEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFHLRGPSARLNFPEYLVGEGGLHDTSAASIRKKATEVGATVDAIECARTASNQYKSCAFSEKPDLNKEPDPENSDVDDDHHYHL* 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16404301 16404760 + Vvi7g1029 Vvi7g1029 789895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1029 152 Gene3D AP2/ERF domain 23 83 IPR036955 GO:0003700|GO:0006355
Vvi7g1029 152 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Vvi7g1029 152 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Vvi7g1029 152 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Vvi7g1029 152 MobiDBLite consensus disorder prediction 129 152 - -
Vvi7g1029 152 MobiDBLite consensus disorder prediction 7 21 - -
Vvi7g1029 152 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Vvi7g1029 152 PRINTS Ethylene responsive element binding protein signature 63 83 IPR001471 GO:0003700|GO:0006355
Vvi7g1029 152 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 9 143 - -
Vvi7g1029 152 MobiDBLite consensus disorder prediction 1 21 - -
Vvi7g1029 152 MobiDBLite consensus disorder prediction 128 152 - -
Vvi7g1029 152 CDD AP2 23 82 IPR001471 GO:0003700|GO:0006355
Vvi7g1029 152 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14983 PF00847 AP2 2.80E-11 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1029 K09286 - vvi:100233129 319.316