Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi7g1029 | ATGGAGGGAGGACAGGAGTGTTGTTCGAGCAGAGAGACGAGGAAGAGGGTGACGGGGCAAGGTGAGAAGCGGTACAAGGGGATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCTGAGATTAGAGAACCCAACAAGAGGTCACGCATATGGCTGGGCTCCTACTCCACACCGGTGGCCGCTGCCCGTGCTTACGACACCGCCGTCTTTCACCTGAGAGGACCGTCGGCGAGGCTCAACTTCCCGGAGTACCTGGTGGGAGAAGGTGGGCTCCACGACACCTCCGCTGCGTCTATACGCAAAAAAGCTACGGAGGTGGGGGCGACAGTAGACGCTATAGAATGTGCCAGGACGGCTTCCAACCAATACAAATCCTGCGCCTTCTCTGAGAAACCCGACCTCAATAAAGAACCGGATCCTGAAAATTCGGATGTTGACGATGACCACCACTATCATCTCTGA | 459 | 56.21 | MEGGQECCSSRETRKRVTGQGEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFHLRGPSARLNFPEYLVGEGGLHDTSAASIRKKATEVGATVDAIECARTASNQYKSCAFSEKPDLNKEPDPENSDVDDDHHYHL* | 153 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 16404301 | 16404760 | + | Vvi7g1029 | Vvi7g1029 | 789895 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi7g1029 | 152 | Gene3D | AP2/ERF domain | 23 | 83 | IPR036955 | GO:0003700|GO:0006355 | |
Vvi7g1029 | 152 | ProSiteProfiles | AP2/ERF domain profile. | 24 | 81 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi7g1029 | 152 | SUPERFAMILY | DNA-binding domain | 24 | 82 | IPR016177 | GO:0003677 | |
Vvi7g1029 | 152 | SMART | rav1_2 | 24 | 87 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi7g1029 | 152 | MobiDBLite | consensus disorder prediction | 129 | 152 | - | - | |
Vvi7g1029 | 152 | MobiDBLite | consensus disorder prediction | 7 | 21 | - | - | |
Vvi7g1029 | 152 | PRINTS | Ethylene responsive element binding protein signature | 25 | 36 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi7g1029 | 152 | PRINTS | Ethylene responsive element binding protein signature | 63 | 83 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi7g1029 | 152 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 9 | 143 | - | - | |
Vvi7g1029 | 152 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Vvi7g1029 | 152 | MobiDBLite | consensus disorder prediction | 128 | 152 | - | - | |
Vvi7g1029 | 152 | CDD | AP2 | 23 | 82 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi7g1029 | 152 | Pfam | AP2 domain | 24 | 73 | IPR001471 | GO:0003700|GO:0006355 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14983 | PF00847 | AP2 | 2.80E-11 | CL0081 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi7g1029 | K09286 | - | vvi:100233129 | 319.316 |