Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi7g1032 | ATGTGGGATCTCAACGACTCGCCTGATCAGAGGAGGGACGATGAATCGGAAGGCTGTTCTTCACAGAAGACCTCGAATTCGAGCTCGTCAGCTGTAGTAATCGAGGACGGATCCGATGAAGAAGACGGAGAGAGGGGTCAGAGGAAGCGAAGCAGTAAAATATTCGGCTTCTCAGTGACCCATGAAGATGAGGGTGAGCCACCGGTTACCCGGCAGTTTTTTCCGATGGAGGAGTCGGAAATGGGGACTACTTCCTGCGGTGGTGCTGCGGCCTTCCCTCGAGCTCACTGGGTTGGTGTCAAATTCTGCCAGTCGGAGCCACTCAACACCGCAGGCGTTGCCACCGCCAAGTCACTGGAGGCGTCTCAGCCCTTGAAGAAGAGCCGCCGTGGCCCCAGGTCTAGAAGCTCCCAGTACCGCGGCGTTACCTTTTACCGGAGAACTGGCCGGTGGGAGTCCCACATATGGGACTGTGGAAAACAAGTTTATTTAGGTGGATTTGACACCGCACATGCAGCTGCTCGCGCATATGATAGGGCTGCTATCAAGTTCCGGGGAGTGGAGGCAGACATTAATTTCAGCCTTGAAGACTATGAGGAAGACTTAAAACAGATGGGCAATCTAACCAAGGAAGAGTTTGTGCATGTCCTTCGCCGACAAAGTACTGGTTTTCCGAGAGGAAGCTCCAAGTATAGAGGTGTAACCTTACACAAGTGCGGAAGATGGGAAGCTAGAATGGGCCAATTTTTAGGCAAAAAGTATGTGTACTTGGGCCTGTTCGATACAGAAATTGAAGCTGCTAGGGCCTATGACAAAGCTGCAATTAAATGTAATGGCAAAGAGGCTGTCACCAACTTCGATCCCAGTATTTATGAAAATGAGCTCAACTCATCCGGTAATGCTGCAGATCACAATCTCGATTTGAGCTTGGGTGGCTCCGCATCCAAGCAGAACAATCTGGAATTGGGGGATGACAGCCAAGTTGTTACAATGGATCAGCATTCGGTGGGGATGTCATTTGAAGCTGATTGGCGGAGTCGGGGCTTCAGACCTAAGCAGGAGGCGTGTAAAAGCGATGGGGATGCCCTCCGGAGAAATGGATATAATGAAATGGAAACCATGCAGCTTCTGAGCCACACCCACCTACAATCGCCAGCGGCATTAAAGCCAGGTGAAATGTACAGATATGGGCAATTCAGAAGAGCTGGAGAAACCCAGATGCTTCATATACTTCCGCCACAGCTCAGCTCACCAAATTATCAGATTCAGTTTCCAAGCAGCAGTAACGGAGGCCGAATTGCTGTCAACGGAGGAGATCTCTCTCTGGCCACAAACCATCAACAATGGCAATCCGGTCCCCCACAATTGTTTGCAACTGCTGCAGCATCATCAGGATTCCCACCGCAGATGATTAGACCCAACCAACAATGGCCGCAGAAAAATGGGTTCCACTCTCTCATCAGACCCTCCTGA | 1473 | 50.71 | MWDLNDSPDQRRDDESEGCSSQKTSNSSSSAVVIEDGSDEEDGERGQRKRSSKIFGFSVTHEDEGEPPVTRQFFPMEESEMGTTSCGGAAAFPRAHWVGVKFCQSEPLNTAGVATAKSLEASQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSLEDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSSGNAADHNLDLSLGGSASKQNNLELGDDSQVVTMDQHSVGMSFEADWRSRGFRPKQEACKSDGDALRRNGYNEMETMQLLSHTHLQSPAALKPGEMYRYGQFRRAGETQMLHILPPQLSSPNYQIQFPSSSNGGRIAVNGGDLSLATNHQQWQSGPPQLFATAAASSGFPPQMIRPNQQWPQKNGFHSLIRPS* | 491 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 16436968 | 16440701 | + | Vvi7g1032 | Vvi7g1032 | 789898 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi7g1032 | 490 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 484 | - | - | |
| Vvi7g1032 | 490 | ProSiteProfiles | AP2/ERF domain profile. | 230 | 287 | IPR001471 | GO:0003700|GO:0006355 | |
| Vvi7g1032 | 490 | SUPERFAMILY | DNA-binding domain | 229 | 289 | IPR016177 | GO:0003677 | |
| Vvi7g1032 | 490 | MobiDBLite | consensus disorder prediction | 1 | 70 | - | - | |
| Vvi7g1032 | 490 | Pfam | AP2 domain | 229 | 278 | IPR001471 | GO:0003700|GO:0006355 | |
| Vvi7g1032 | 490 | Pfam | AP2 domain | 138 | 186 | IPR001471 | GO:0003700|GO:0006355 | |
| Vvi7g1032 | 490 | Gene3D | AP2/ERF domain | 229 | 288 | IPR036955 | GO:0003700|GO:0006355 | |
| Vvi7g1032 | 490 | Gene3D | AP2/ERF domain | 137 | 195 | IPR036955 | GO:0003700|GO:0006355 | |
| Vvi7g1032 | 490 | MobiDBLite | consensus disorder prediction | 41 | 68 | - | - | |
| Vvi7g1032 | 490 | MobiDBLite | consensus disorder prediction | 20 | 34 | - | - | |
| Vvi7g1032 | 490 | SMART | rav1_2 | 138 | 200 | IPR001471 | GO:0003700|GO:0006355 | |
| Vvi7g1032 | 490 | SMART | rav1_2 | 230 | 293 | IPR001471 | GO:0003700|GO:0006355 | |
| Vvi7g1032 | 490 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
| Vvi7g1032 | 490 | PANTHER | FLORAL HOMEOTIC PROTEIN APETALA 2-LIKE ISOFORM X1 | 1 | 484 | - | - | |
| Vvi7g1032 | 490 | SUPERFAMILY | DNA-binding domain | 137 | 195 | IPR016177 | GO:0003677 | |
| Vvi7g1032 | 490 | CDD | AP2 | 229 | 289 | IPR001471 | GO:0003700|GO:0006355 | |
| Vvi7g1032 | 490 | PRINTS | Ethylene responsive element binding protein signature | 231 | 242 | IPR001471 | GO:0003700|GO:0006355 | |
| Vvi7g1032 | 490 | PRINTS | Ethylene responsive element binding protein signature | 269 | 289 | IPR001471 | GO:0003700|GO:0006355 | |
| Vvi7g1032 | 490 | CDD | AP2 | 138 | 193 | IPR001471 | GO:0003700|GO:0006355 | |
| Vvi7g1032 | 490 | ProSiteProfiles | AP2/ERF domain profile. | 138 | 194 | IPR001471 | GO:0003700|GO:0006355 | |
| Vvi7g1032 | 490 | MobiDBLite | consensus disorder prediction | 117 | 138 | - | - |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 14984 | PF00847 | AP2 | 3.30E-10 | CL0081 | Vvi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi7g1032 | K09284 | - | vvi:100268051 | 947.192 |