Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1048 ATGGGACTCCAAGGCCGTGGTGGTACCATACAGTATCGGAGTCATACTAGGTTTCCAGGCTACTGGAGGTTATTAGACGTGATTTACCTGCCTGATGAAAATGAAGATGAGGATGATGAGAATGATGACATGCGTCTTGACATTGATAACATGTCGTATGAGGAATTGCTTGCTCTTGGAGAGCACATTGGAAATGTCAGCACAGGGTTGAGCAAGGAAGTGATTATGGCAAGGCTGAAGCAAAGGAAGTATATTTGCTTAGCAACAGGCCCTTGTGTTGGTGAGAAAACTTGCTGCATATGTCAGGAAGAGTATGCAGATGATGATGATATCGGAAAGCTAGATTGTGAGCACGAGTATCATGTTGCCTGCATCAGGGAATGGCTGGTACAGAAGAACTCGTGCCCCATTTGCAAGAAGACTGCCTTGGCTACCTGA 438 45.66 MGLQGRGGTIQYRSHTRFPGYWRLLDVIYLPDENEDEDDENDDMRLDIDNMSYEELLALGEHIGNVSTGLSKEVIMARLKQRKYICLATGPCVGEKTCCICQEEYADDDDIGKLDCEHEYHVACIREWLVQKNSCPICKKTALAT* 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16601209 16602203 - Vvi7g1048 Vvi7g1048 789914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1048 145 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 143 IPR013083 -
Vvi7g1048 145 SMART ring_2 98 138 IPR001841 -
Vvi7g1048 145 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE 27 144 - -
Vvi7g1048 145 SUPERFAMILY RING/U-box 97 142 - -
Vvi7g1048 145 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 27 144 IPR045191 GO:0061630
Vvi7g1048 145 ProSiteProfiles Zinc finger RING-type profile. 98 139 IPR001841 -
Vvi7g1048 145 Pfam Ring finger domain 97 139 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g1048 Vvi18g369 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1048 - - vvi:104879919 290.812