Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1049 ATGAAAAGTTTGGTTATATCAATCCCAACATATTGCCGTTGTAGTCCTATTAGGATTCCAGGGCACTGGTGGTCATTTGGTATGATTTACCAGCCTGAGGATGAAATGCGCCTTGACATCAATAACATGTCATATGAGGAATTGCTTGCACTTGGAGAGCGCATTGGAAGTGTGAGCACAGGGCTCAGTGAGGAAGTAATTATGGCTAAGATGGAGAAATGGAAGTATAGCTGCTCAACAACAGGGCATTCAGTTGATGCAGAGACTTGCTGCATATGTCTGGAGGAGTATGCAGATGATGATGATGTTGGAAAGCTAGACTGTGGGCATGAGTATCATGTTGCCTGCATCAAGGAATGGTTGGTACAGAAGAACTCATGCCCCATTTGCAAGAATACTGCCTTGGCTACCTGA 414 44.44 MKSLVISIPTYCRCSPIRIPGHWWSFGMIYQPEDEMRLDINNMSYEELLALGERIGSVSTGLSEEVIMAKMEKWKYSCSTTGHSVDAETCCICLEEYADDDDVGKLDCGHEYHVACIKEWLVQKNSCPICKNTALAT* 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16607539 16613125 + Vvi7g1049 Vvi7g1049 789915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1049 137 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE 33 136 - -
Vvi7g1049 137 ProSiteProfiles Zinc finger RING-type profile. 90 131 IPR001841 -
Vvi7g1049 137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 135 IPR013083 -
Vvi7g1049 137 SUPERFAMILY RING/U-box 71 133 - -
Vvi7g1049 137 SMART ring_2 90 130 IPR001841 -
Vvi7g1049 137 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 33 136 IPR045191 GO:0061630
Vvi7g1049 137 Pfam Ring finger domain 89 131 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g1049 Vvi18g743 ECH
Vvi3g391 Vvi7g1049 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1049 - K19041 vvi:104879920 220.705