Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1054 ATGGTGGTATATCAGCTTCTTAGACTTTTGGGTCAAGATGTACTGGTCGACTCGCCTTCCCACCAGGCCGGTTCTAATTCGGCTCCTGCCCACCAGGCAGCTTCTATCTTGGAACTCAGGACCCAGCCACCTACTAACTTAGCGCCAGTCTCTGAAGAAGCTGCTAGTTTGGCACCTGCTACCTGGCTGCCTCCGTACTTGCCTGCCCTCCGCGCTGCTACTAGTTTGGCACCGGCTAACTGGCTGCCTGCTTACTTGGAACCTGCCGACCAGGTAGAAAATAACTTTGCGCCAGTTAGTTGGGATGAAAATGACTTTGACGAAGAGGAGGAGGACGATGATTATAACAATGAAGATATGCGTGCAGATGTGGACAACATGTCCTACGAGGAACTGCTAGCACTGGAGGACCATATTGGGAATGTCAGCACTGGCTTGAACGAGGACGCCATCAAGGCAAAGCTTAAGCCAAAGAAGTACAGCAGTTTCACAATGGGCCCTCCTGTGGAGGGCGAGATCTGCTGCATCTGCCAAGAAGAGTATGAAGAAGGCGAAACGATGGGAATACTCGACTGCGGGCACGAGTTCCATTCCGACTGCATTAAACAGTGGCTTGTGCAGAAGAATTTGTGCCCCATATGCAAGACGGCCGCGCTTGTATAA 663 51.58 MVVYQLLRLLGQDVLVDSPSHQAGSNSAPAHQAASILELRTQPPTNLAPVSEEAASLAPATWLPPYLPALRAATSLAPANWLPAYLEPADQVENNFAPVSWDENDFDEEEEDDDYNNEDMRADVDNMSYEELLALEDHIGNVSTGLNEDAIKAKLKPKKYSSFTMGPPVEGEICCICQEEYEEGETMGILDCGHEFHSDCIKQWLVQKNLCPICKTAALV* 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16651425 16652337 + Vvi7g1054 Vvi7g1054 789920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1054 220 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE 105 220 - -
Vvi7g1054 220 ProSiteProfiles Zinc finger RING-type profile. 174 215 IPR001841 -
Vvi7g1054 220 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 105 220 IPR045191 GO:0061630
Vvi7g1054 220 CDD RING-H2_TTC3 174 215 - -
Vvi7g1054 220 SMART ring_2 174 214 IPR001841 -
Vvi7g1054 220 Pfam Ring finger domain 174 215 IPR001841 -
Vvi7g1054 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 218 IPR013083 -
Vvi7g1054 220 SUPERFAMILY RING/U-box 128 217 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g391 Vvi7g1054 ECH
Vvi7g1054 Vvi18g743 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1054 - - vvi:104879941 416.001