Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1055 ATGGCGGATCAGTACACCAAGCCTTGCTCTTCTTCTCCTGTGCCACCGTCATCCGCTTCGGAACCGGACGAAATATCTCTCTTTCTCCACCAGATTCTTTTCCGGTCGTCGTCGTCGTCGTCAACCACTTCGCTTCACAATGCCAAACTTATGCCGAGCGAGTTTCTGTCGGAGAATCCTCTCAGACAGTGTCGATCCCCTCTTATTTCCAGCTCGGATCGCCTCGTTCGGGACGGAATGAACTCCTCCACCGGCGTTTATTTTCCCGTGAGTGCCGGAACTGCGTCTTCGTCGGCTGGAGGCTTCGACAATGACCTGGACGAGTACGACTGCGAGAGTGAGGAAGGTCTTGAAGCATTGGTGGAAGAGGTGGCGACAAAGGCAGCTCCTCTGCGAAGTTCGTCGAAGAGAAGCAGGGCTGCCGAGGTCCATAATTTGTCTGAAAAGAGGAGGAGGAGTAGGATTAACGAGAAAATGAAAGCGTTGCAGAATCTAATTCCAAATTCTAACAAGACAGACAAGGCTTCCATGCTTGATGAGGCCATCGAATACCTCAAGCAGCTTCAGCTTCAAGTACAGATGTTATCAATGAGAAATGGGTTAAGTTTGCATCCTATGTGTCTACCTGGAGTACTGCCGCCTGTCCAACTTTCCCAGATGAGAATAGGCATTGGAGAGGAAAATGGATCCCTGCATATGGACATGACTGGCACACTTCCTGTGAACCAAGAAACCATGGAATACAGGCTAGCCAACCAAGGCACCTCCTCAAGTCATCCATCGGTCCCCAACTTGACAGATATAATGAATTCAGAAACTTCATTTGGATTGGAATCATCAATCCAGGCTCACCTTGGACCTTTTCAGCTCCAAACATCCTCTGCGGATATCTGCAGGGAAGACGTGTTGCCTCATCAGCAGTTAAACATAAGTTGTGCAGGAACAAATTCATTAGAATTAAAAATGGAAACCACAATTACAGTGTCACTACCCTATGATGCACAAGCTTCTGGTGTGAAAGACAGCAACACTCTGGAATCGTGCATCCAAAGAAGAGATCTGTCTGAAGGCATGCTCCTAAAGAACATTGAACACAACCAAGTTCCTTTTCCCCAATTGAATGGCATGCATACGGGTAGAAGTGTTCCCAATGATGACATGAAGACAGATAGGCTTGATTTTTGA 1185 47.51 MADQYTKPCSSSPVPPSSASEPDEISLFLHQILFRSSSSSSTTSLHNAKLMPSEFLSENPLRQCRSPLISSSDRLVRDGMNSSTGVYFPVSAGTASSSAGGFDNDLDEYDCESEEGLEALVEEVATKAAPLRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMCLPGVLPPVQLSQMRIGIGEENGSLHMDMTGTLPVNQETMEYRLANQGTSSSHPSVPNLTDIMNSETSFGLESSIQAHLGPFQLQTSSADICREDVLPHQQLNISCAGTNSLELKMETTITVSLPYDAQASGVKDSNTLESCIQRRDLSEGMLLKNIEHNQVPFPQLNGMHTGRSVPNDDMKTDRLDF* 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16661372 16668053 + Vvi7g1055 Vvi7g1055 789921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1055 394 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 188 IPR011598 GO:0046983
Vvi7g1055 394 SMART finulus 145 194 IPR011598 GO:0046983
Vvi7g1055 394 MobiDBLite consensus disorder prediction 137 151 - -
Vvi7g1055 394 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 17 312 IPR031066 -
Vvi7g1055 394 Coils Coil 178 198 - -
Vvi7g1055 394 Pfam Helix-loop-helix DNA-binding domain 143 189 IPR011598 GO:0046983
Vvi7g1055 394 MobiDBLite consensus disorder prediction 370 394 - -
Vvi7g1055 394 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 199 IPR036638 GO:0046983
Vvi7g1055 394 MobiDBLite consensus disorder prediction 1 19 - -
Vvi7g1055 394 CDD bHLH_AtPIF_like 139 201 - -
Vvi7g1055 394 MobiDBLite consensus disorder prediction 1 22 - -
Vvi7g1055 394 MobiDBLite consensus disorder prediction 128 151 - -
Vvi7g1055 394 PANTHER TRANSCRIPTION FACTOR SPATULA 17 312 - -
Vvi7g1055 394 Gene3D - 134 198 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g1055 Vvi18g744 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14987 PF00010 HLH 4.60E-14 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1055 - - vvi:100245665 726.857