Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi7g1057 | ATGGCCGACGAGGAGCCCATAGTCGCCGGACGGCGGAGGAGCAGAGGAGCTGAGGCGACGGCCCGCTCGGACGCCCTCCAGCGTCTAAAAGCCCTCCGCCGAGGCGGCCGGCGCTCCGATGGCGTTGGATTCCAGATCAAGGTGGAAGATCCAATCTACGACACTGTCGACGAGGATGAGTACGACAAACTCGTTGCCAAGCGCCGCGAAGAATTCAGAGGGTTCATAGTCGACGATAATGGCTCAGGGTACGGAGACGAAGGTCAAGAAGAGGACTGGTCCCTAGCGGGTGTCCCTCCATCTTCCGATGAATCGGACGGCGAAGCGGAGAGGCCTAAGAAGAAGAAAACCGAAAAGAAGGACCCGCCTCCCAAAAAGCCCTCTCCGCTTTCTGCTGCGGCGGCTATGATGGGGAAGCAACGGCTTTCTTCCATGTTCACTTCTTCAGTTTTCAAGAAAAGTAGGGATGATAAAGTTAAGGGACTGTCGTGTGATAGTATAGTGGATGATGTGATTGCTGAATTTGCTCCTGATGAGGCTGATAGAGAGAGGCGTCGGAGGGGACAATCGGGGTTGGTGTCTGGTGGGAGGAATTTTGTTCCGGGTACCACCATTAAGATGGAGATATCACCGATTTCGATTAGGCCTGAGCCTACCAAGGTCACTATAGCAGATGGTGATTCCGTGTCAAAAACCAAAGATGGAAAAGATTTGAATTCGAAAATGGATGCAGAGTCAATTGTCCAATCACATGATCCTTTAACCAAGGTAGATGCAGTTGAGGAGACTGTGCCAGATGCGGTTGAGGATAAATCAGAGCAGGCTGTGAAGAGAAAGGAGGTTCATTCACTCAATGCAAAAATTAAAGAGGAGAAAGACCTGACATTGAGTGCCGCCACTGCCGGGTGGCAGGCAGTAAGGAATGGAGGCAATCCTAGTGCTGGTTATGAGGGAGAGGTGGTTAATCCTAGTTTGAATTGTGAGGAGAAGGCAGATTTTTTGCTGGATTCAGATGGGTCACTGCCTTTCTACATACTTGATGCCCACGAGGAATTTTATGGTGCTAATATGGGCAACCTCTATCTGTTTGGGAAGGTTAAAGCAGGAAGTGCATATCATAGCTGCTGTGTGGTGGTAAAGAACATGGAGCGATGTGTCTATGCAATCCCAAATGATTCGGTGTTTGGCAATGATGAAATCATGAGGCTTGAGAAAGATATCGAAGCCTCTCGGGTTTCTCCTGCAGCTTTGAGGACAAAATTGCAAGACGTGGCATCAGGATTAAAGAATGAAATAGCAAAACAGTTGTTAAATCTCAATGTTTCAACTTTTAGCATGACGCCAGTTAAGAGGAGTTATGCATTTGAGCGAGCTGATATACCTGTCGGGGAGAATTATGTCCTAAAGATTAATTACCCATTTAAGGACCCACCACTTCCAGCAGATCTCAAAGGAGAGGCATTTTGTGCTCTGCTTGGAACTCATTGCAGTGCTTTAGAGCTTTTTCTCATTAAAAGGAAGATTATGGGACCTTACTGGCTCTCAATTTCAAAATTTTCCAGTTGTCCAGCTCCTGAACGGGTGAGCTGGTGCAAATTTGAGGTTACTGTTGATTGTCCAAAGGACATAAGGATTTTGGCTTCCTCTTCAAAGAACATAGCAGAGATTCCACCAGTGGTTGTAACAGCTATCAATTTGAAAACTATCATCAATGAAAAACAGAATGTAAATGAAATAGTGTCTGCATCTGTCATCTGCTGTCATAAGGTCAAGATTGATTCCCCCATGTTACCCTCAGAATGGAAGAGGCCTGGTGTGCTCAGCCATTTTACTGTTGTACGCAAACTTGATGGAGGCATATTCCCAATGGGGTTTCAGTTAAACATTTTGTTCTTTGGCAAAATTTATCATTCCAAAATTCTTGAAAGAGCTCTTTTAAACCGTCTGATGATTGAGCTGTACAAATTGGATAGCGATGTTCTTGTTGGTCATAATATTTCTGGGTTTGATCTGGATGTTCTTCTCCACAGAGCTGAGGCTTGCAAAGTTCCCATGTGGTCCAAGATAGGTCGTCTCAAGCGTCGGGTGATGCCTAAGCTTACCAGAGGAAGCACCATTTTTGGTTCCGGAGCAAGCCCAGGGATCATGTCTTGCATTGCTGGTCGGCTTTTATGTGATACTTATCTGTGTTCCCGTGACCTATTAAAAGAAGTCAGTTATTCTTTGACACAACTTGCAAAGACTCAGCTGAACAAAGATCGGAAGGAGATTGCTCCACAAGATGTTTCTAGAATGTTTCAAACATCGGAATCCCTTGTGCAACTTATTGAATATGGTGAAACAGATGCATGGTTATCCATGGAACTTATGTTTCATTTGAGTGTTCTTCCTCTTACTCGTCTTCTGACTAATATCAGTGGTAATCTCTGGGGAAAGACTCTCCAAGGTGCTAGGGCACAGAGAGTAGAATATCTTCTATTGCATGAGTTCCATGCAAAGAAAATGAATCAAGCCTACTCCGGTGGATTGGTTTTGGAACCAAAGAGAGGCTTGTATGACAAGTATATATTACTTTTGGACTTCAATAGCCTTTACCCTTCAATCATTCAGGAATACAATATCTGCTTCACAACAGTTGAAAGATCTCCAGATGGATCGGTTCCTCGTTTACCATCTAGTAAAACGACTGGGGTTTTACCTGAGTCACTTGCTCTTCTCGTAGTTTATTTGTTTCCATCTAGTGCATGCTTTTACCCTACTGGTTTGTGGTTGATTGCGCTTGAGAACATGAAAGGAGCTTACATGTTTATGTGGTTGTTTACTGTAAGAATTTTGCTTCAAAGAAGGAAGATACAGAGGAGGATAAGACTCCTTAAAGGGAGGGAGATGTGTTTTCATAGAGAGAGAGAAAGGGGGGGGGGGTGCAGATGTGCTCATGTTTCAAGTGTGAAATTTCCGATCAAATATTATTGTTTTGCTTTTACTTTACATACCTTGTTGAAAAAATTAGTTGAGAGGAGGAAAACCGTAAAGTCTAGGTTAAAGACAGCATCTGGTCTCAAGGTCCAGCAGCTTGACATTCAGCAGCAGGCACTGAAACTCACTGCAAATAGTATGTATGGATGCCTGGGGTTTTCCAATTCAAGATTTTATGCAAAGCCACTGGCAGAGCTTATAACACTACAAGGAAGGGAGATTTTGCAGAGTACTGTTGATCTCGTTCAGAATAATCTAAACTTGGAGGTGATATATGGTGATACTGATTCAATTATGATTTATACTGGGCTGGATGATATTACAAAAGCCAAAGCAATTGCAGGGAAAGTCATTCAAGAGGTCAACAAAAAATATAGGTGTTTAGAAATTGATCTCGATGGCTTGTACAAGAGAATGCTGCTTCTCAAGAAAAAGAAATATGCAGCTGTCAAATTACAGTTCAAAGATGGTACACCATATGAGGTTATTGAACGAAAGGGTCTTGATATGGTTCGTCGTGACTGGAGTTTACTATCAAAGGAATTGGGAGATTTCAGCTTAAGTCAAATCTTGTCTGGAGGGTCGTGTGAGGATGTTGTTGAATCAATACACAACTCTCTCATGAAGGTACAAGAGGACATGAGGAATGGAGAAGTAGCACTAGAGAAATATATTATCACTAAGTCATTGACTAAACCCCCTGAAGCGTACCCAGACAAGAACCAACCACATGTTCAAGTGGCACTAAGATTGAAGCAAAGTGGTTACTCAACTGGTTGCTCAGCTGGTGATACAGTCCCTTATATTATTTGCTGTGAGCAGGGGACTAGTTCAGGTAGTTCAACAGGGATAGCACAGCGTGCTAGACATCCTGATGAATTGAAAAGAGACAATGGAAAATGGATGATTGACATTGATTACTACTTGGCACAGCAGATTCATCCTGTGGTCTCTCGTCTATGTGCTTCAATTCAGGGTACAAGCCCAGCACGTTTGGCCGATTGTTTAGGGCTTGACTCATCCAAGTTCCAAAGTAGACGAAGTGAGGCCATCAACAATGATTTTTCCATCTCACTCTTGTCTGCAGATGAGGAGAGATATAGAGGTTGTGAGCATCTAATCTTGTCTTGTCCAAGCTGCTTTGGTACTTTTGACTGCCCAACTTTGTTCAATTCTGTGCATACATCAATCACTGAAAAATCAACACAAGTGCAAGTAGAGGAATCCAACAATTTCTGGCAAAGGTTACGTTGCCCTAAATGCCCAGAGGAAGGTGATGTGGGTAGAATGTCTCCTGCATTGATAGCCAACCAGGTTAAGAGGCAAGCTGATGGGTTCATCTCAATGTACTATAAGGGTTCAATGATGTGTGATGATGAAACCTGCAAGCACACCACAAATAGTCTCAACCTGCGGGTGATTGGGGATTCCGAGAGAGGAACGGTTTGTCCTAACTACCCTCGCTGTAATGGCCGGCTTGTAAGAAAGTACACGGAAGCAGATCTTTACAAGCAGCTTTCTTATTTCTGCCACGTATTGGATACTGTTCGATGCATTGAGAAGATGGAGGTGAGCACCAGGATCCCAATTGAGAAGGAGTTGGCAAGAATTCGGCCGTTAGTTAACTTGGCAGCATCAACGACTCAAAAGATTAGGGACCGGTGCGCCTACGGATGGGTGCAACTGGATGACCTTACTGTTACAGTTTAA | 4686 | 43.9 | MADEEPIVAGRRRSRGAEATARSDALQRLKALRRGGRRSDGVGFQIKVEDPIYDTVDEDEYDKLVAKRREEFRGFIVDDNGSGYGDEGQEEDWSLAGVPPSSDESDGEAERPKKKKTEKKDPPPKKPSPLSAAAAMMGKQRLSSMFTSSVFKKSRDDKVKGLSCDSIVDDVIAEFAPDEADRERRRRGQSGLVSGGRNFVPGTTIKMEISPISIRPEPTKVTIADGDSVSKTKDGKDLNSKMDAESIVQSHDPLTKVDAVEETVPDAVEDKSEQAVKRKEVHSLNAKIKEEKDLTLSAATAGWQAVRNGGNPSAGYEGEVVNPSLNCEEKADFLLDSDGSLPFYILDAHEEFYGANMGNLYLFGKVKAGSAYHSCCVVVKNMERCVYAIPNDSVFGNDEIMRLEKDIEASRVSPAALRTKLQDVASGLKNEIAKQLLNLNVSTFSMTPVKRSYAFERADIPVGENYVLKINYPFKDPPLPADLKGEAFCALLGTHCSALELFLIKRKIMGPYWLSISKFSSCPAPERVSWCKFEVTVDCPKDIRILASSSKNIAEIPPVVVTAINLKTIINEKQNVNEIVSASVICCHKVKIDSPMLPSEWKRPGVLSHFTVVRKLDGGIFPMGFQLNILFFGKIYHSKILERALLNRLMIELYKLDSDVLVGHNISGFDLDVLLHRAEACKVPMWSKIGRLKRRVMPKLTRGSTIFGSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTQLAKTQLNKDRKEIAPQDVSRMFQTSESLVQLIEYGETDAWLSMELMFHLSVLPLTRLLTNISGNLWGKTLQGARAQRVEYLLLHEFHAKKMNQAYSGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGSVPRLPSSKTTGVLPESLALLVVYLFPSSACFYPTGLWLIALENMKGAYMFMWLFTVRILLQRRKIQRRIRLLKGREMCFHRERERGGGCRCAHVSSVKFPIKYYCFAFTLHTLLKKLVERRKTVKSRLKTASGLKVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYTGLDDITKAKAIAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGTPYEVIERKGLDMVRRDWSLLSKELGDFSLSQILSGGSCEDVVESIHNSLMKVQEDMRNGEVALEKYIITKSLTKPPEAYPDKNQPHVQVALRLKQSGYSTGCSAGDTVPYIICCEQGTSSGSSTGIAQRARHPDELKRDNGKWMIDIDYYLAQQIHPVVSRLCASIQGTSPARLADCLGLDSSKFQSRRSEAINNDFSISLLSADEERYRGCEHLILSCPSCFGTFDCPTLFNSVHTSITEKSTQVQVEESNNFWQRLRCPKCPEEGDVGRMSPALIANQVKRQADGFISMYYKGSMMCDDETCKHTTNSLNLRVIGDSERGTVCPNYPRCNGRLVRKYTEADLYKQLSYFCHVLDTVRCIEKMEVSTRIPIEKELARIRPLVNLAASTTQKIRDRCAYGWVQLDDLTVTV* | 1562 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 16682440 | 16697668 | - | Vvi7g1057 | Vvi7g1057 | 789923 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi7g1057 | 1561 | Gene3D | DNA Polymerase alpha, zinc finger | 1353 | 1546 | IPR038256 | - | |
| Vvi7g1057 | 1561 | TIGRFAM | pol2: DNA polymerase (pol2) | 998 | 1313 | - | - | |
| Vvi7g1057 | 1561 | TIGRFAM | pol2: DNA polymerase (pol2) | 50 | 907 | - | - | |
| Vvi7g1057 | 1561 | Pfam | DNA polymerase family B, exonuclease domain | 372 | 743 | IPR006133 | - | |
| Vvi7g1057 | 1561 | Coils | Coil | 1110 | 1130 | - | - | |
| Vvi7g1057 | 1561 | MobiDBLite | consensus disorder prediction | 177 | 204 | - | - | |
| Vvi7g1057 | 1561 | PRINTS | DNA-directed DNA-polymerase family B signature | 856 | 869 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
| Vvi7g1057 | 1561 | PRINTS | DNA-directed DNA-polymerase family B signature | 1029 | 1041 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
| Vvi7g1057 | 1561 | PRINTS | DNA-directed DNA-polymerase family B signature | 1082 | 1090 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
| Vvi7g1057 | 1561 | Gene3D | - | 383 | 509 | - | - | |
| Vvi7g1057 | 1561 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Vvi7g1057 | 1561 | SUPERFAMILY | DNA/RNA polymerases | 836 | 1331 | IPR043502 | - | |
| Vvi7g1057 | 1561 | CDD | POLBc_alpha | 838 | 1331 | IPR045846 | GO:0003887|GO:1902975 | |
| Vvi7g1057 | 1561 | Gene3D | - | 557 | 794 | IPR036397 | GO:0003676 | |
| Vvi7g1057 | 1561 | Gene3D | - | 343 | 542 | - | - | |
| Vvi7g1057 | 1561 | Gene3D | Helix hairpin bin | 995 | 1043 | - | - | |
| Vvi7g1057 | 1561 | Gene3D | Palm domain of DNA polymerase | 832 | 1146 | IPR023211 | - | |
| Vvi7g1057 | 1561 | MobiDBLite | consensus disorder prediction | 76 | 139 | - | - | |
| Vvi7g1057 | 1561 | ProSitePatterns | DNA polymerase family B signature. | 1084 | 1092 | IPR017964 | GO:0000166|GO:0003676 | |
| Vvi7g1057 | 1561 | MobiDBLite | consensus disorder prediction | 104 | 125 | - | - | |
| Vvi7g1057 | 1561 | Pfam | DNA polymerase alpha subunit p180 N terminal | 26 | 93 | IPR024647 | - | |
| Vvi7g1057 | 1561 | SMART | polmehr3 | 557 | 1096 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
| Vvi7g1057 | 1561 | Pfam | DNA Polymerase alpha zinc finger | 1354 | 1557 | IPR015088 | GO:0003887|GO:0006260 | |
| Vvi7g1057 | 1561 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
| Vvi7g1057 | 1561 | Gene3D | - | 795 | 831 | - | - | |
| Vvi7g1057 | 1561 | PANTHER | DNA POLYMERASE ALPHA CATALYTIC SUBUNIT | 997 | 1559 | - | - | |
| Vvi7g1057 | 1561 | PANTHER | DNA POLYMERASE ALPHA CATALYTIC SUBUNIT | 13 | 907 | - | - | |
| Vvi7g1057 | 1561 | SUPERFAMILY | Ribonuclease H-like | 442 | 831 | IPR012337 | - | |
| Vvi7g1057 | 1561 | CDD | DNA_polB_alpha_exo | 557 | 800 | - | - | |
| Vvi7g1057 | 1561 | Pfam | DNA polymerase family B | 810 | 893 | IPR006134 | GO:0000166|GO:0003677 | |
| Vvi7g1057 | 1561 | Pfam | DNA polymerase family B | 996 | 1315 | IPR006134 | GO:0000166|GO:0003677 | |
| Vvi7g1057 | 1561 | Gene3D | - | 1160 | 1345 | IPR042087 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi7g1057 | K02320 | - | vvi:100250805 | 1646.71 |