Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1061 ATGACGTGGGTTCGCGGCGGCACCATCGGCCGTGGGAGTTTCGCCACCGTCAGTTTGGCCGTTTCGAGGGCCGGGGAAGATCGGTTTCCTCCATTGATGGCTGTGAAGTCTTGTGGGGTTGAGGACTCTGCTACACTTAGGAACGAGACACAAGTGTTGAGTCGACTTGGGGATTGCCAGGAGGTTCTCCGATGTTATGGCGATGAGTATAGCTGTGAGGGCGGTAGAGAGTTGTACAACGTGTTGTTGGAGTACGCTGCTGGTGGGAGTTTGGCCGATTATGTCAGGGATTTTGGTGCTTTGGTTGAATCCGATGTTAAGAGATATACAAGGTCGATTCTTAGAGGGCTTGATTACATTCATGGAGTTGGGTTTGTTCACTGCGATGTCAAGCTTCAAAACCTACTCCTCTGTTCTTCGAATGACTCTGTTTTCTGCGCCAAGATTGGAGATTTTGGGCTCGCGAAGAAGGCTGAGAAAGTTGCAGAGAAGAAGGGGTTCAGGGGTACGCCTATGTACATGGCGCCGGAGTGTCTGTCCGGGGAGGAGCATAGCGCTGCGGCCGATATTTGGGCTCTAGGATGTGCGGTGGTGGAGATGGCGAGTGGGAAGCCAGCGTGGCAGTGCCAGCCGGGGACTGACGCGAATGCGTTGTTGTTTAGGATTTGGGGCGGGAAAGCGTCGCCGGAGACTCCATCGGAGTTGTCTGAGGAGGGAAAAGATTTTCTTGAAAAGTGTTTCTTGCGTGATCCGAGAAAGAGATGGACGGCGGAGATGCTTCTTGATCATCCGTTCGTCGCCGGTACCGACGTGACTGTTCCATTGAAACAGTCCGACGAAGCCTCCACTTCCCCAAGAAGTCCTTTCGATTTTCCGGAATGGGCCTCCGATCACACCCCTTCACCGACGCCGGATTCTGAGGCCTGCTTCGACAGAGACCTCAATTCATGGCTCAATTCATCATCTCACTCCTGGACATCTCCCGCGGACCGAATCCGGCAACTGGTGACCGATCAGACGCCCAATTGGTCCGTTTCGGAGAGTTGGTTCGCCGTCAGAAATAATTTTTGGATAAGATTTGTTATATTTTATTTTTATTCTTGTTATTGA 1110 52.07 MTWVRGGTIGRGSFATVSLAVSRAGEDRFPPLMAVKSCGVEDSATLRNETQVLSRLGDCQEVLRCYGDEYSCEGGRELYNVLLEYAAGGSLADYVRDFGALVESDVKRYTRSILRGLDYIHGVGFVHCDVKLQNLLLCSSNDSVFCAKIGDFGLAKKAEKVAEKKGFRGTPMYMAPECLSGEEHSAAADIWALGCAVVEMASGKPAWQCQPGTDANALLFRIWGGKASPETPSELSEEGKDFLEKCFLRDPRKRWTAEMLLDHPFVAGTDVTVPLKQSDEASTSPRSPFDFPEWASDHTPSPTPDSEACFDRDLNSWLNSSSHSWTSPADRIRQLVTDQTPNWSVSESWFAVRNNFWIRFVIFYFYSCY* 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16722077 16724954 - Vvi7g1061 Vvi7g1061 789927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1061 369 MobiDBLite consensus disorder prediction 277 305 - -
Vvi7g1061 369 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Vvi7g1061 369 ProSiteProfiles Protein kinase domain profile. 3 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1061 369 Gene3D Transferase(Phosphotransferase) domain 1 2 299 - -
Vvi7g1061 369 SUPERFAMILY Protein kinase-like (PK-like) 3 304 IPR011009 -
Vvi7g1061 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Vvi7g1061 369 Pfam Protein kinase domain 6 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1061 369 CDD STKc_MAPKKK 3 266 - -
Vvi7g1061 369 SMART serkin_6 3 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g1061 369 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 330 - -
Vvi7g1061 369 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 330 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76736 PF00069 Pkinase 4.30E-55 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1061 - - vvi:100259363 711.449