Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1063 ATGGATATTGATGTGCTAAAATCGACAGTACAAGATCAGATGGACATGATGTCAATGATGATGCAAATGGACAAGCTTCCTGAACTCTTTGGACCCTACCAGGAGCCTTCCGAATTGCCGGAGATGGAATTCTCCGGCGGTGCAACTGCCACCACCATAGGAACTGCACCGCCCATGTTCCATAGCCCTCTCATAAATCCATCTTCCTCCATATCGTTTATGAGCACCCCAGTCCAAGAACCCATGACACCACCTCTTCTTCCCCATGTGGGCTCTGGGAGATTGAAAAGTGCCGGTGAATTATGCGGTGTAAATCCATTTTCACCTCCCTCAGAGAAGAAAAACTCCATGGCAGCAATGAGAGAGATGATATTCTCAATTGCCGTGATGCAGCCCATTCACATAGACCCCGAGTCTGTCAAGCCACCCAAGAGGAGGAACGTGAAGATATCCAAGGATCCGCAGAGCGTGGCGGCGAGGCACAGGAGGGAAAGGATCAGCGAGAGGATAAGGATTCTGCAGAGACTAGTACCAGGAGGAACCAAAATGGATACAGCCTCAATGTTGGATGAGGCTATTCATTATGTGAAGTTTCTGAAGAACCAGGTACAATCACTGGAAAGGGCAGGAGCCCATAGGCCAATGGGTGTTGTTGGGTTCCCAGCAACCACAACCTCAATGGCCAATCCCAATTACTCATCTTTGGCCAAAGCTTTCCAGACTTCTCCGATGGTGGGCTCTATGCAGATGTTTAGGTGA 759 49.14 MDIDVLKSTVQDQMDMMSMMMQMDKLPELFGPYQEPSELPEMEFSGGATATTIGTAPPMFHSPLINPSSSISFMSTPVQEPMTPPLLPHVGSGRLKSAGELCGVNPFSPPSEKKNSMAAMREMIFSIAVMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKNQVQSLERAGAHRPMGVVGFPATTTSMANPNYSSLAKAFQTSPMVGSMQMFR* 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16738986 16739745 + Vvi7g1063 Vvi7g1063 789929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1063 252 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 1 248 - -
Vvi7g1063 252 Gene3D - 149 214 IPR036638 GO:0046983
Vvi7g1063 252 Pfam Helix-loop-helix DNA-binding domain 160 199 IPR011598 GO:0046983
Vvi7g1063 252 Coils Coil 189 209 - -
Vvi7g1063 252 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Vvi7g1063 252 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 248 IPR045843 GO:0003700|GO:0006355
Vvi7g1063 252 SMART finulus 156 205 IPR011598 GO:0046983
Vvi7g1063 252 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 209 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g1063 Vvi18g754 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14988 PF00010 HLH 1.60E-06 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1063 - - vvi:100254182 467.618