Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1111 ATGGGTCGTGTTAAACTGCAGATTAAGAGAATAGAAAACAACACAAATCGACAAGTCACATTCTCTAAACGAAGAAATGGACTCATCAAAAAGGCTTATGAGCTCTCAGTCCTCTGCGATATCGATATCGCCCTCATTATGTTCTCACACTCCGGTCGTCTCAGCCATTTTTCCGGCAAGAGAAGAGTTGAAGATGTACTAACGCGATATATAAATCTCCCAGATCATGAGAGAGGAGGAATTCTGTTGAACGTGCAGTATTTGATCAGTACCCTTAAGAAGCTCAAGACAGAAAATGACATTGCTCTGCAACTTGCCAATCCTGTGGCTGTTAACTCTAACGTGGAGGAACTCAACCAAGAAATCAATAATTTACAGCATCAGCTCCAGATAGCAGAAGAACAATTAAGAATATTTGAGCCTGACCCACTGGCCTTTACCTCAACTGGGGAACTTGAATCTTGTGAGAAGAACCTGTTGGAGGCCTTGAATCGAGTCACAGAAAGAAAAAAATATCTACTGAGTAACCATTTATCTACTTACGACCCAGCAAGTATACAGGCGTACTTGGATTCACAGGAGGGTTTACCAACCTCATTTGAGAACGAGGTTATGGGCTGGTTGCCGGAAAATGGACACAACCATACCCAAATGTTTGGATCTGACCCTTGTGTTCCTCTGAGGAACCATCCATCAACGAATGTCTACGATAATCTGGGCCATGGAACAAGTATCAATGTGGACCCAATCAACATGGGAGGATGCCACATCAGCAACTCGGGCTGTGAGGGCCTTCCACCGTGGCATCATTCATACACCTCAACTGAACTCCTCTCAGCCCTCATGCCTCAACCCTCATACCCTCCTCCTAAGCATGAGATGGCACCGGGTTCAATTATCCCAACAATGATGCCACATCAGCAAATGGAAGCCACGTCAAATTGCCAGCACTTGCCATCTGGTGAAGATGATTCAGCTTATGACAAAGCCCAACTGCCACAGCTTCACGTGGAATAA 1017 44.94 MGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSHSGRLSHFSGKRRVEDVLTRYINLPDHERGGILLNVQYLISTLKKLKTENDIALQLANPVAVNSNVEELNQEINNLQHQLQIAEEQLRIFEPDPLAFTSTGELESCEKNLLEALNRVTERKKYLLSNHLSTYDPASIQAYLDSQEGLPTSFENEVMGWLPENGHNHTQMFGSDPCVPLRNHPSTNVYDNLGHGTSINVDPINMGGCHISNSGCEGLPPWHHSYTSTELLSALMPQPSYPPPKHEMAPGSIIPTMMPHQQMEATSNCQHLPSGEDDSAYDKAQLPQLHVE* 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17253878 17256929 - Vvi7g1111 Vvi7g1111 789977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1111 338 MobiDBLite consensus disorder prediction 308 338 - -
Vvi7g1111 338 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Vvi7g1111 338 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Vvi7g1111 338 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 303 - -
Vvi7g1111 338 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi7g1111 338 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi7g1111 338 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 303 - -
Vvi7g1111 338 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Vvi7g1111 338 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi7g1111 338 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi7g1111 338 Coils Coil 115 135 - -
Vvi7g1111 338 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi7g1111 338 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi7g1111 338 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g1111 Vvi18g364 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14992 PF00319 SRF-TF 3.00E-25 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1111 - - vvi:100254344 686.411