Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1123 ATGTCGGATCATGAGGATGTTTCTCCTCTCATCGCTCCTTCTCCGATGGCCGAACCCTCCGAGATCGACCTCGAAGCCGGTCAGGGAGAGCAAATCCAGTGCAGAATTTGCCTCGAAACCGATGGTAGGGATTTTATTGCTCCTTGCAAGTGTAAAGGGACATCCAAGTACGTTCACCGGGAATGTTTGGATCATTGGCGAGCTGTGAGGGAAGGGTTTGCATTTGCTCATTGCACAACCTGCAAGGCCCCTTATCATTTGAGAGTTCATGTTGTTGCTGATAGGAAATGGCGAACGTTGAAATTTCGGTTCTTTGTGACTAGAGACATTATATTTATATTTCTGGCAGTTCAGCTTGTAATTGCTTCATTTGCATATTTGGTGTACTTAATAGATGGTTTCCAGCAGTTCTGGCTTCGACTAGCATGGGGTTTTGACAGTGAAATTAGTTTCTACTACATATGTGGAGCACTGTTGTTTTTTGCTTTGCTGGGATTATCTGGGTGCTTCATAACTTGCTACGATCGAAGGGTGCGAAATGATCTGGCTCAGCCTTGTCGAGAGTTATGTCTTTGTTGCTGTCAGCCCGGAATGTGTGCAGACTGCCATTTACCAGGCACTCTTTGTATGTGGACTGACTGCACAACATGCTTTGAAAGTTGTGCAAGCACAGCAGGTGAATGCGGCTGCTTAGGAGGTGCTGGCGAGGCAGGCTTGCCATTGTTATTTATTATGGCTTTGATTGTACTAGGACTGTTTACTGTGATTGGCATATTCTACAGCGTATTGGTGGCTACAATGGTTGGACAACGCATTTGGCAGAGGCATTATCACATACTTGCAAAGAGGATGCTGACAAAAGAGTACGTTGTTGAGGATGTTGACGGTGAGATGACAGGGTCTGAGTGGTCACCCCCGCCTCTACCATCTGAGCATGTTCAGCAGCTGAAAGCACTTGGCCTCCTATGA 969 46.44 MSDHEDVSPLIAPSPMAEPSEIDLEAGQGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVREGFAFAHCTTCKAPYHLRVHVVADRKWRTLKFRFFVTRDIIFIFLAVQLVIASFAYLVYLIDGFQQFWLRLAWGFDSEISFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPGMCADCHLPGTLCMWTDCTTCFESCASTAGECGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSEWSPPPLPSEHVQQLKALGLL* 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17363453 17376262 - Vvi7g1123 Vvi7g1123 789989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1123 322 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Vvi7g1123 322 SUPERFAMILY RING/U-box 30 86 - -
Vvi7g1123 322 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 322 - -
Vvi7g1123 322 CDD RING_CH-C4HC3_MARCH 34 82 - -
Vvi7g1123 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 95 IPR013083 -
Vvi7g1123 322 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Vvi7g1123 322 PANTHER BNAA04G12620D PROTEIN 1 322 - -
Vvi7g1123 322 SMART ringv_2 33 82 IPR011016 GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1123 - - vvi:100266317 660.603