Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1141 ATGATTCGCTTTACATATAGTTTCTCTTTTTTGGCTTCAAGATTCCACACAAAAAACTTGTCATTAGCCAGTGTTTGTTTCTTTCCTTTTGTATCCATTCCCAACCGCCTTTCCACTCTTTATTTCCCTTCTTTTTATCCTCTCCTACCTCTCTCTCTTTCTCTCACGCCTTATAAACTCTCAACTCAAATTCCACTCTCACCCACTATAACACTTCTCTTTGTATCAACTTCGCTCTGCGCTATCTCCATGACAGGGAAAAGAGCTCAAAATAGCCCCGTCGGCAGCCCATCTTCCGACACTTCTTCTTCGAAGGAGCAAGACCGCTTCCTCCCCATCGCCAACGTGAGCCGGATCATGAAGAAATCGCTCCCGGCCAACGCAAAGATATCGAAAGAAGCCAAGGAGACCGTCCAGGAATGCGTGTCCGAGTTCATAAGCTTCATCACCGGCGAAGCCTCCGACAAATGCCAGCGCGAGAAGAGGAAAACCATCAATGGCGATGATCTTCTCTGGGCCATGACCATGCTCGGATTCGAAAACTACGTTGGGCCCTTGAAGGTTTACCTCAGCAAGTACAGAGAGACGGAAGGAGAAAAGAACAACGTCGTCGCTAGACATGAAGACCAGTCTGCTGTATTCAACTCAAACCAGATGAACAAAGCTAATAAATCTATTCCTATCGACCCAGATTTTCAAGGTTTTAATGGTGGGTTTTATTCACTTGGGCCACAAATGAATGGAGACGAAGCTGCAGCAGCCATGGGATATGGCGACAGCCTGGTGACTGGAGCTTTTAATCGGAGTAGAATCAGAGAAAATGATGGAAATGGTAATAGAATTATGGCAAGCTACTCATCCCCACAATGGAGTTGA 876 45.89 MIRFTYSFSFLASRFHTKNLSLASVCFFPFVSIPNRLSTLYFPSFYPLLPLSLSLTPYKLSTQIPLSPTITLLFVSTSLCAISMTGKRAQNSPVGSPSSDTSSSKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTMLGFENYVGPLKVYLSKYRETEGEKNNVVARHEDQSAVFNSNQMNKANKSIPIDPDFQGFNGGFYSLGPQMNGDEAAAAMGYGDSLVTGAFNRSRIRENDGNGNRIMASYSSPQWS* 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17548418 17549294 + Vvi7g1141 Vvi7g1141 790007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1141 291 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 110 174 IPR003958 -
Vvi7g1141 291 Gene3D Histone, subunit A 97 226 IPR009072 GO:0046982
Vvi7g1141 291 ProSitePatterns NF-YB/HAP3 subunit signature. 141 157 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vvi7g1141 291 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 86 250 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vvi7g1141 291 PRINTS CCAAT-binding transcription factor subunit A signature 138 156 - -
Vvi7g1141 291 PRINTS CCAAT-binding transcription factor subunit A signature 157 175 - -
Vvi7g1141 291 PRINTS CCAAT-binding transcription factor subunit A signature 176 194 - -
Vvi7g1141 291 SUPERFAMILY Histone-fold 107 232 IPR009072 GO:0046982
Vvi7g1141 291 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 86 250 - -
Vvi7g1141 291 MobiDBLite consensus disorder prediction 88 107 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14996 PF00808 CBFD_NFYB_HMF 1.10E-26 CL0012 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1141 K08065 - vvi:100245836 403.675