Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi7g1179 | ATGTCTACTACTTCTCAAGCCATGCTCAACCAAGGCTTGTTTGAGGATCAAGAGATGCCCTCACAACTGGGTTTCTATTCTTTTCATCCCAACTTGAGTTTTCCACAAGTTGGTTGCCAACAATCCCTAAAAGCCTTCAACATACCCCCTTCACTTGCAGCTGATGCTCCTTCTTCTCTCACTGAAGCCCTCCTCTCTTCTGCACCAACAAAGCAAAGAGAAGACATCACTCCTCATTTGGGAGGAGCCCAACTCCTCTCCTTGCAAAGATCAACTGCAAATCTCTGGGCTTGGGGAGAGGTGAATGAGTGCTTGAGCAGCAAGAGAAGTATCGGTGGAGATGACCACCTGGGTGTCTCTGCAATGAAGATGAAGAAGATAAAAGCCAGAAGAAAGGTGAGAGAGCCTAGGTTTTGCTTCAAGACCATGAGTGAGGTGGATGTTCTTGATGACGGTTACAAATGGAGAAAGTATGGCCAGAAAGTTGTAAAAAATACCCAGCATCCCAGGAGTTACTATCGTTGTACACAAGACAATTGTCGCGTAAAGAAACGAGTCGAGCGACTAGCGGAGGATCCAAGGATGGTGATAACGACGTATGAAGGTCGACACATTCATTCGCCCTCCCACGATTTAGAAGAGTCGCAAGCTCCATCCCATCTCAATAATTTCTTTTGGTAG | 681 | 46.26 | MSTTSQAMLNQGLFEDQEMPSQLGFYSFHPNLSFPQVGCQQSLKAFNIPPSLAADAPSSLTEALLSSAPTKQREDITPHLGGAQLLSLQRSTANLWAWGEVNECLSSKRSIGGDDHLGVSAMKMKKIKARRKVREPRFCFKTMSEVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHIHSPSHDLEESQAPSHLNNFFW* | 227 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 17958305 | 17960930 | + | Vvi7g1179 | Vvi7g1179 | 790045 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi7g1179 | 226 | Gene3D | WRKY domain | 136 | 202 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi7g1179 | 226 | PANTHER | WRKY TRANSCRIPTION FACTOR 13-RELATED | 33 | 217 | - | - | |
Vvi7g1179 | 226 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 33 | 217 | IPR044810 | GO:0003700 | |
Vvi7g1179 | 226 | SUPERFAMILY | WRKY DNA-binding domain | 141 | 208 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi7g1179 | 226 | SMART | WRKY_cls | 149 | 208 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi7g1179 | 226 | Pfam | WRKY DNA -binding domain | 150 | 206 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi7g1179 | 226 | ProSiteProfiles | WRKY domain profile. | 144 | 209 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi7g1179 | 226 | MobiDBLite | consensus disorder prediction | 207 | 226 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14998 | PF03106 | WRKY | 8.40E-25 | CL0274 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi7g1179 | - | - | vvi:100247547 | 460.299 |