Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1179 ATGTCTACTACTTCTCAAGCCATGCTCAACCAAGGCTTGTTTGAGGATCAAGAGATGCCCTCACAACTGGGTTTCTATTCTTTTCATCCCAACTTGAGTTTTCCACAAGTTGGTTGCCAACAATCCCTAAAAGCCTTCAACATACCCCCTTCACTTGCAGCTGATGCTCCTTCTTCTCTCACTGAAGCCCTCCTCTCTTCTGCACCAACAAAGCAAAGAGAAGACATCACTCCTCATTTGGGAGGAGCCCAACTCCTCTCCTTGCAAAGATCAACTGCAAATCTCTGGGCTTGGGGAGAGGTGAATGAGTGCTTGAGCAGCAAGAGAAGTATCGGTGGAGATGACCACCTGGGTGTCTCTGCAATGAAGATGAAGAAGATAAAAGCCAGAAGAAAGGTGAGAGAGCCTAGGTTTTGCTTCAAGACCATGAGTGAGGTGGATGTTCTTGATGACGGTTACAAATGGAGAAAGTATGGCCAGAAAGTTGTAAAAAATACCCAGCATCCCAGGAGTTACTATCGTTGTACACAAGACAATTGTCGCGTAAAGAAACGAGTCGAGCGACTAGCGGAGGATCCAAGGATGGTGATAACGACGTATGAAGGTCGACACATTCATTCGCCCTCCCACGATTTAGAAGAGTCGCAAGCTCCATCCCATCTCAATAATTTCTTTTGGTAG 681 46.26 MSTTSQAMLNQGLFEDQEMPSQLGFYSFHPNLSFPQVGCQQSLKAFNIPPSLAADAPSSLTEALLSSAPTKQREDITPHLGGAQLLSLQRSTANLWAWGEVNECLSSKRSIGGDDHLGVSAMKMKKIKARRKVREPRFCFKTMSEVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHIHSPSHDLEESQAPSHLNNFFW* 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17958305 17960930 + Vvi7g1179 Vvi7g1179 790045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1179 226 Gene3D WRKY domain 136 202 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi7g1179 226 PANTHER WRKY TRANSCRIPTION FACTOR 13-RELATED 33 217 - -
Vvi7g1179 226 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 33 217 IPR044810 GO:0003700
Vvi7g1179 226 SUPERFAMILY WRKY DNA-binding domain 141 208 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi7g1179 226 SMART WRKY_cls 149 208 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi7g1179 226 Pfam WRKY DNA -binding domain 150 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi7g1179 226 ProSiteProfiles WRKY domain profile. 144 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi7g1179 226 MobiDBLite consensus disorder prediction 207 226 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14998 PF03106 WRKY 8.40E-25 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1179 - - vvi:100247547 460.299