Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1193 ATGTGCGTGTTGAAGGTGGCGAACGCGAGAAAATCTGAACAGAGATTGAGGGTTGAGGGGGTCAGGGACGATGAGATGGACGGCGGCGCTGCCTCAGGGGTGATGTTTCCGGGGCATAACAGAGAGAGGGAGATGTCAGCAATGGTGACTGCTCTCACCAATGTGGTGGCCGGCCACGTTTCTGATGATCTGGTGAACCAGACTGGCTCTGACCCCTGTTGTTTGCTGGGTTCTTGTTCGTGGGGCGCAGGCCACAAGAGAGGACGAGATGATCAAGGCCATGTCTCTGAATCAGTTTCCACTATTTCTAGAGCTTTTGGCGATCTTTCACATGGAGGATCATCATCTTTCAGAGTTGGAGAAGGTTCGGTGTTGAATACGAATACAACGGCAGCCAGTGAGAGTTCATTAATGGTTCCCACATATGAGTATGTTGATACGTACAGAGGAGAGCCAAGGAGGAGATACAGAGGAGTGAGGCAGAGGCCATGGGGGAAGTGGGCAGCTGAAATAAGGGATCCCTACAGAGCTGCCAGGGTGTGGTTGGGCACATTCGACTCTGCTGAAGCCGCAGCAAGAGCTTATGATGAGGCTGCTCTCCGGTTCAGAGGCAACAAAGCTAAACTCAACTTCCCTGAAAACGTCCAGCTCCGGCCATCTCCCTCCGGTTCTCAGGCAACCCAGTTGGCCATTTCCGATTCTCCAGAAACCCTTTTCTCGGTTCCTTCATACACCAACCCCATAGTTCAATCTCAACCACTTCACCGGAGCCGGAGCTCTGAGCTTCCCGGAGATTACTTCAACTATTCTCAGATGGGTTCGAGCTCTTCCGATTATTTTCCGAGGCAGCCCATGAATTTATTAGACCAAATGCGCCTGGCTTCTCCTTTACAATCTTCGTCCTCGTTGTCTTCTTCTTCTCCTCTTGGTTCCTCTGTTTCATCTGCTTCATCATCTCCACCTCCTTTTTCCCCGTTTTTTCCGCCACAGCCTCCGTCCGCCGGTCAGAGTGGTGGAGCAGATATTCCGGCACCGCCATGGTCGGACACCAGCCAGTGA 1059 52.31 MCVLKVANARKSEQRLRVEGVRDDEMDGGAASGVMFPGHNREREMSAMVTALTNVVAGHVSDDLVNQTGSDPCCLLGSCSWGAGHKRGRDDQGHVSESVSTISRAFGDLSHGGSSSFRVGEGSVLNTNTTAASESSLMVPTYEYVDTYRGEPRRRYRGVRQRPWGKWAAEIRDPYRAARVWLGTFDSAEAAARAYDEAALRFRGNKAKLNFPENVQLRPSPSGSQATQLAISDSPETLFSVPSYTNPIVQSQPLHRSRSSELPGDYFNYSQMGSSSSDYFPRQPMNLLDQMRLASPLQSSSSLSSSSPLGSSVSSASSSPPPFSPFFPPQPPSAGQSGGADIPAPPWSDTSQ* 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18105372 18106928 - Vvi7g1193 Vvi7g1193 790059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1193 352 CDD AP2 163 214 IPR001471 GO:0003700|GO:0006355
Vvi7g1193 352 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 40 337 - -
Vvi7g1193 352 Pfam AP2 domain 155 204 IPR001471 GO:0003700|GO:0006355
Vvi7g1193 352 ProSiteProfiles AP2/ERF domain profile. 155 212 IPR001471 GO:0003700|GO:0006355
Vvi7g1193 352 PANTHER DNA-BINDING DOMAIN 40 337 IPR044808 GO:0003700|GO:0009873
Vvi7g1193 352 MobiDBLite consensus disorder prediction 298 320 - -
Vvi7g1193 352 MobiDBLite consensus disorder prediction 298 352 - -
Vvi7g1193 352 SMART rav1_2 155 218 IPR001471 GO:0003700|GO:0006355
Vvi7g1193 352 PRINTS Ethylene responsive element binding protein signature 178 194 IPR001471 GO:0003700|GO:0006355
Vvi7g1193 352 PRINTS Ethylene responsive element binding protein signature 156 167 IPR001471 GO:0003700|GO:0006355
Vvi7g1193 352 SUPERFAMILY DNA-binding domain 155 213 IPR016177 GO:0003677
Vvi7g1193 352 Gene3D AP2/ERF domain 154 214 IPR036955 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g1193 Vvi18g1351 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15000 PF00847 AP2 3.70E-14 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1193 - - vvi:100264647 613.609