Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1200 ATGGCCACCGGAGGTCGACTCGTTGCTGGTTCTCATCACAGAAATGAGTTCGTGCTTATCAATGCTGATGACATTGCTCGTATCAAGTCTGTGCGAGAATTGAGTGGGCAAATTTGTCACATATGTGGGGATGGAGTGGAGATTACAGTGGACGGTGAGCTCTTCGTTGCCTGCAATGAATGTGCCTTCCCTGTGTGCAGGCCTTGCTACGAATATGAGAGAAGGGAAGGAAATAAGGTGTGTCCTCAGTGTAAAACCAGATACAAGCGCATGAAAGGTAATCCCAGGGTTGAAGGCGATGAGGAAGAGGACGATATTGATGATCTAGAACATGAGTTTGATTATGCAAATTCTAATACTTGGGCCACACAAGAAGTTGCAGGGGAGATGCTCACTGTATGCCTTGATATTGATTGCGGTAACCATGATAGTGCCTCTGGGATCTCTACATGTTCAGAATTGGTTTCCCCTCCCCTTAGCTCTCAAGTCCCGCTATTGAGCTACCCCATGGAGAATGCTGATATACATGCTGACCAACATGCCTTAATAGTGCCCCCATTTACGGGTTACAGAAATAGAATTTATCCCACACCATATAACGATCCATCTGTATCTTTGCAATCCAGGCCAATCGTTCCTAAGAAAGATGTAGCTGTATATGGATATGGAAGTGTGGCATGGAAGGATCGAGTGGTCGAGTGGAAGAAAAGGCAGAATGAGAAACTTCAGATGGTTGAGCATCAAAGACAAAATGAGGATGGAGATGTTGGTGGGGATGGACCAGATGATACTGATTTGCCTAAGATGGATGAAGCGAGGCAACCACTTTCAAGGAAGTTACCCATTCCTTCAAGCATAATAAGCCCTTACAGATTGATAATTATACTCCGACTCATAATTCTTGGCTTCTTTTTCCATTATAGACTTCTTCATCCAGTTCATGATGCATATGGCTTGTGGGTAACATCAGTTATATGTGAAATATGGTTTGCTATATCATGGATTCTGGATCAGTTTCCAAAATGGTGTCCAGTACGTCGAGAAACATACCTTGATCGGCTCTCACTAAGGTATGAAAAAGAAGGGAAGCCTACTGAATTGGCCAGCATAGACATCTTTGTGAGCACGGTTGATCCTACAAAAGAACCTCCATTAATCACTGCAAACACGGTTCTCTCCATCCTTGCTGTGGATTATCCAGTTGATAAAGTTGCATGCTACGTCTCAGATGATGGTGCTGCCATGCTCACTTTTGAAGCACTTTCTGAGACCTCTGAATTTGCCAGGAAATGGGTCCCTTTCTGTAAAAAATTTAGTATTGAGCCCCGTGCCCCTGAATGGTATTTTTCTCAGAAAATCGACTATCTCAAAAACAAAGTTCATCCGGCATTTGTGAAACAACGACGCGCAATGAAGAGAGAGTATGAGGAGTTCAAAGTTCGAATAAATGGGTTAGTTTCCATGGCACAAAAGGTTCCTGAGGAAGGCTGGACAATGCAGGATGGAACTCCATGGCCTGGAAACAATGTTCGCAATCATCCTGGCCTGATCCAGGTGTTCCTAGGCCACGTTGGTGTTCATGATATTGAAGGAAATGAATTACCTCGTCTAGTTTATGTCTCTCGTGAGAAGAGGCCAGGGTTTGAACATCACAAAAAAGCTGGTGCTATGAATGCTCTGGTGCGAGTTTCAGCAGTCATTTCAAATGCCCCGTATCTTCTGAACGTTGACTGTGACCATTATATCAACAATAGCAAGGCACTTAGAGAAGCTATGTGTTTCATGATGGACCCCTCATTGGGTAAGAGAGTTTGCTATGTCCAGTTTCCCCAAAGATTTGATGGGATCGATCGTCATGATAGATACTCAAATCGAAATATCGTCTTCTTTGATATTAACATGAGAGGCTTAGATGGTATACAAGGACCGATATATGTTGGAACCGGTTGTGTCTTCAGAAGGCAAGCACTTTATGGTTATGATGCTCCTGTCAAGAAGAAACCCCCTGGCAAGACCTGTAACTGTCCCCGATGTTGCTGCCTGTGTTGTGGGTCTCGAAAGGGCAAAAAAGTGAAGCAAAGGGACCAAAAAAAGAAGAAAATGAAGCACAGGGAGTCTTCAAACCAGATATATGCACTTGAAACCATTCAGGGGGGAATTAAAGGAATCTACACCGAGCAAGCATCCAAGACATCCCCAGATGAACTTGAGAAGAAGTTTGGGCAGTCACCCGTGTTCATAGCCTCTACGCTTTTGGAGAACGGTGGAATTCCTGATGAAGCCCGTCCTGCGTCACTCTTGAAAGAAGCCATCCAAGTCATTAGCTGTGGCTATGAAGATAAAACAGATTGGGGAAAGGAGGTTGGCTGGATATATGGCTCTGTGACAGAGGATATACTAACAGGGTTCAAGATGCACTGCCATGGATGGCGGTCTGTTTACTGCATACCCAAGCGGCCTGCATTCAAGGGCTCAGCTCCCATCAACCTCTCAGATCGTCTGCACCAGGTTCTTCGGTGGGCCCTTGGGTCTGTTGAGATTTTCTTTAGCAAACACTGTCCAGTCTGGTATGGCTACGGGGGTGGCTTGAAATGGCTGGAACGATTTTCCTACATAAACTCCGTCGTGTATCCTTGGACCTCAATTCCATTGATCATTTACTGTACCTTGCCAGCCATCTGCCTCCTCACCGGGAAATTCATCGTCCCTGAGATCAGCAACTACGCAAGCATCGTGTTCATAGCACTCTTCATATCCATAGCTGCAACAGGCATCATCGAGATGCGATGGGGTGGCGTAGGAATAGATGATTGGTGGAGAAATGAGCAGTTCTGGGTAATAGGAGGTGTTTCATCACACCTTTTTGCTCTTTTCCAGGGTTTACTCAAGGTTTTGGCCGGCGTCAACACAAATTTCACCGTTACCTCCAAAGCAGGTGACGATGGAGAATATTCTGAGCTTTACCTCTTCAAATGGACATCTTTGTTAATTCCTCCAACCACATTACTGATCATAAACATAGTTGCCGTCGTGGTTGGCATCTCCGATGCCATCAACAATGGATACGAATCCTGGGGCCCCCTGTTTGGTAAACTATTCTTTGCCTTATGGGTGATAGTCCACCTCTACCCCTTCCTCAAAGGACTGATTGGAAAAAAAGACAGGCTGCCCACCATCATCCTGGTCTGGTCAATTCTGCTGGCCTCACTCTTAACTCTTTTGTGGGTTCGAATCAATCCATTTTTGACCAAAGACGGCCTTGTCCTGGAGGTTTGTGGATTGGATTGTGACTAA 3294 45.14 MATGGRLVAGSHHRNEFVLINADDIARIKSVRELSGQICHICGDGVEITVDGELFVACNECAFPVCRPCYEYERREGNKVCPQCKTRYKRMKGNPRVEGDEEEDDIDDLEHEFDYANSNTWATQEVAGEMLTVCLDIDCGNHDSASGISTCSELVSPPLSSQVPLLSYPMENADIHADQHALIVPPFTGYRNRIYPTPYNDPSVSLQSRPIVPKKDVAVYGYGSVAWKDRVVEWKKRQNEKLQMVEHQRQNEDGDVGGDGPDDTDLPKMDEARQPLSRKLPIPSSIISPYRLIIILRLIILGFFFHYRLLHPVHDAYGLWVTSVICEIWFAISWILDQFPKWCPVRRETYLDRLSLRYEKEGKPTELASIDIFVSTVDPTKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFSQKIDYLKNKVHPAFVKQRRAMKREYEEFKVRINGLVSMAQKVPEEGWTMQDGTPWPGNNVRNHPGLIQVFLGHVGVHDIEGNELPRLVYVSREKRPGFEHHKKAGAMNALVRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPSLGKRVCYVQFPQRFDGIDRHDRYSNRNIVFFDINMRGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPGKTCNCPRCCCLCCGSRKGKKVKQRDQKKKKMKHRESSNQIYALETIQGGIKGIYTEQASKTSPDELEKKFGQSPVFIASTLLENGGIPDEARPASLLKEAIQVISCGYEDKTDWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSKHCPVWYGYGGGLKWLERFSYINSVVYPWTSIPLIIYCTLPAICLLTGKFIVPEISNYASIVFIALFISIAATGIIEMRWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVNTNFTVTSKAGDDGEYSELYLFKWTSLLIPPTTLLIINIVAVVVGISDAINNGYESWGPLFGKLFFALWVIVHLYPFLKGLIGKKDRLPTIILVWSILLASLLTLLWVRINPFLTKDGLVLEVCGLDCD* 1098
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18214793 18222114 - Vvi7g1200 Vvi7g1200 790066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1200 1097 SUPERFAMILY Nucleotide-diphospho-sugar transferases 379 914 IPR029044 -
Vvi7g1200 1097 Pfam Cellulose synthase 370 1085 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vvi7g1200 1097 SUPERFAMILY RING/U-box 26 109 - -
Vvi7g1200 1097 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED 1 1096 - -
Vvi7g1200 1097 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Vvi7g1200 1097 MobiDBLite consensus disorder prediction 245 269 - -
Vvi7g1200 1097 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 111 IPR013083 -
Vvi7g1200 1097 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 525 662 IPR029044 -
Vvi7g1200 1097 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
Vvi7g1200 1097 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1096 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g1200 Vvi18g1360 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1200 K10999 - vvi:100264552 2137.07