Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1210 ATGGAGGATATGAATGATGAGACATTGGACCATTCCAACCAGTTGAACATTGGGAAACCTCCTAGAAGCCTCTCTGTTATGCGGCATTGCATCAGCTCAGCTAGATTGACCGGCGCAGCTGATTGGGAGTCTGATATTGGCATTATTAGCTTAAAATCACCATCAAGTGAGAAATCTGGTTATTTACCCGTGCTTCGTTCGGGAAGCTGGTCTGAGATAGGGCCCAAACAATATATGGAGGACGAGTACATCTGCATCGATAATTTTCACAAGCATTTTGGTGCAGCTCCAAACATCCCTTCTCCTGGAGCATTTTATGGGGTGTTTGATGGACACGGTGGCATTGATGCAGCATCATTTACCAGAAAGAACATCCTCAAGTTTATTGTTGAGGATGCCCATTTCCCAGTAGGCATAAAAAAGGCTGTTAAGAGTGCTTTTGCAAAAGCTGATCATGCATTTGCTGATGCTAGCTCTCTTGATAGATCCTCTGGAACCACTGCTTTGATTGCCCTAATTTTTGGAAGTACCATGCTGGTCGCTAATGCTGGGGATTCACGAGCCGTATTGGGCAAGCGGGGAAGAGCAGTTGAGCTCTCTAAAGACCACAAACCCAACTGCACATCTGAGAGACTAAGAATTGAGAAACTGGGCGGTGTCATTTATGATGGCTACCTCAATGGGCAACTATCAGTGGCCCGTGCTCTTGGAGACTGGCACATGAAGGGTCCCAAAGGTTCAAACTGCCCCCTAAGCTCCGAGCCAGAACTGCAGGAAATAATCCTCACAGAGGAAGACGAATTCCTGATACTAGGCTGCGATGGCCTGTGGGACGTGATGAGTAGCCAGTGTGCGGTGACGATGACTAGGAAGGAGCTCATGTCACACAATGACCCCGAGAGGTGCTCAAAAGAGCTTGTCAGAGAGGCACTGAAGCGCAACTCCTGTGACAACCTGACAGTAGTTGTGGTATGTTTCTCCCCAGACCCACCTCCACGGATCGAAATCCCGAAATCCCAGAGGAGGAGGAGCATATCAGCAGAAGGGCTGGACCTTCTCAAGGGTGTTTTGAACAATTCTTTGGTGTCTGTCTTGAAAGTTGTTGCAGTATATTTCTTGTGCCTGGTATATACCAATCTTATCATAGTAAAGGCTTTGCATTAG 1164 47.25 MEDMNDETLDHSNQLNIGKPPRSLSVMRHCISSARLTGAADWESDIGIISLKSPSSEKSGYLPVLRSGSWSEIGPKQYMEDEYICIDNFHKHFGAAPNIPSPGAFYGVFDGHGGIDAASFTRKNILKFIVEDAHFPVGIKKAVKSAFAKADHAFADASSLDRSSGTTALIALIFGSTMLVANAGDSRAVLGKRGRAVELSKDHKPNCTSERLRIEKLGGVIYDGYLNGQLSVARALGDWHMKGPKGSNCPLSSEPELQEIILTEEDEFLILGCDGLWDVMSSQCAVTMTRKELMSHNDPERCSKELVREALKRNSCDNLTVVVVCFSPDPPPRIEIPKSQRRRSISAEGLDLLKGVLNNSLVSVLKVVAVYFLCLVYTNLIIVKALH* 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18304596 18309144 - Vvi7g1210 Vvi7g1210 790076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1210 387 ProSiteProfiles PPM-type phosphatase domain profile. 66 326 IPR001932 -
Vvi7g1210 387 CDD PP2Cc 66 326 IPR001932 -
Vvi7g1210 387 Gene3D - 51 329 IPR036457 -
Vvi7g1210 387 SMART PP2C_4 56 324 IPR001932 -
Vvi7g1210 387 SUPERFAMILY PP2C-like 59 327 IPR036457 -
Vvi7g1210 387 Pfam Protein phosphatase 2C 76 318 IPR001932 -
Vvi7g1210 387 PANTHER PROTEIN PHOSPHATASE 2C 4 348 IPR015655 GO:0004722|GO:0006470
Vvi7g1210 387 SMART PP2C_SIG_2 81 326 IPR001932 -
Vvi7g1210 387 ProSitePatterns PPM-type phosphatase domain signature. 105 113 IPR000222 GO:0043169
Vvi7g1210 387 PANTHER PROTEIN PHOSPHATASE 2C 47-RELATED 4 348 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g1210 Vvi18g72 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15003 PF00481 PP2C 2.40E-71 CL0238 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1210 K14803 - vvi:100243948 706.057