Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1211 ATGGTTTGGTTTCTGCTTTTAATGGTTTTCTTGAATGGGATCATTTCCAATGGGGTTGGTACAAATGTTTCTTCAAGGCCCAGTGTTGTGAACATTGGGGCTATTTTCAGCTTCAATTCTACCATTGGCAAAGTTGCAAAGTTTGCATTAGAAGCTGCAGTCCAAGATGTGAATTCTGATCCGACTGTTCTTGGTGGAACCAAGCTGAAACTTAGGACTCAGGACACAAATTTTAGCGGGTTTGGAGCGATAATGGAAGCTTTACAATTCATGGAGGGTGATACTGTGGCCATAATTGGCCCTCAATCTTCTGTCATGGCTCATGTAGTTTCTCACATTGCAAACGAGCTTCAAGTTCCTCTGATATCATATGCAGCAACAGACCCCACCCTGTTTTCACTTCAGTACCCATTCTTCCTTATGACAACGCATAGTGATCTATATCAGATGGCAGCAATAGCAGACCTTGTTGACTACTATGGATGGAGAGAAGTTATAGCAATTTATGTTGATGATGATTATGGGAGAAATGGGATTGCTGCATTAGGGGATGAACTTACCAAAAAACGTTGTAAGATCTCTTACAAAGCACCTATGTACCCTGAATCAAGCCGAGATGATATCACTGATGTACTGGTAAAGGTGGCTTTAACAGAGTCTCGGATTCTTGTTGTTCACACTTATACCGAATGGGGCCTAGAGGTGCTTGATGTAGCACAATATCTTGGGATGACAGGGAGTGGGTATGTGTGGATTGCTACCAATTGGCTCTCTACCGTCATGGATACCGATGCTTCTCTCCCTTCAAATGCTATGAATAATATCCAAGGAGTTCTCACATTGCGTATGTATACACCTGCTTCGGAACTAAAAAGTAACTTTGTCTCCAGGTGGAGCAACTTGACTAGTGCGGGGACCACGAATCGCCATGTTGGGTTAAGTGCTTATGGTTTATATGCCTATGACACTGTTTGGGTGCTTGCTCATGCAATTAATGCATTTTTCAATCAGGGAGGAAGTATTTCATTTTCAAATGATTCAAGGTTAACCAAGCTAAGGGGAGGGAGTTTACATCTGGATGCTATGAGCATCTTTGATGGGGGGAACCTGTTGCTTCAAAGCATTTTGCAGGTTAATATGACCGGTGTAACAGGCCCAATAAAGTTTAATTCAGACCATTCCCTTATTCGTCCTGCATATGAAGTCATCAATGTGATTGGCACAGGCGTTAGGAGGATTGGTTATTGGTCTAATTATTCTGGCTTATCAGTTGTGCCTCCAGCAATGCTTTATACGAAGCCACCAAATCGTACCAGTACAAATCAACGACTTTATGATGCAATCTGGCCTGGGCAAGCAGCGCAGACACCCCGTGGGTGGGTATTTCCAAGCAATGGAAGGCAATTGATAATTGGCGTACCTGATCGAGTTAGTTACCGTGAATTTATTTCACGAGTAAAAGGAACTGACATGTTCAAAGGGTACTGCATTGATGTATTTACTGCTGCTTTGAGTTTATTGCCATATGCTGTTCCATATAAGTTAGTACCATTCGGGGATGGCATACATAACCCGAGTTGCACAGATCTCGTGCGCTTGATCACAACTGGTGTGTATGATGCTGCAATTGGTGATATTGCAATCGTGACTAATCGAACAAGGATGGTGGATTTTACACAGCCATATATTGAGTCCGGGCTTGTTGTAGTGGCTCCAATTAAGACTTCAAACTCCAATGCTTGGGCTTTTCTGAAGCCATTTAGTAAAAACATGTGGATTGTCACGGGCACTTTTTTCCTACTTGTGGGAGCTGTTGTCTGGATTTTGGAGCATAGGATTAACGATGAATTTCGGGGTCCTCCTAGAAGACAATTTGTCACTATTCTATGGTTCAGCTTCTCAACTCTTTTCTTTGCACATAGAGAAAATACCGTCAGCACCCTTGGCCGTGTAGTGCTAATCATATGGCTATTTGTAGTTCTAATCATCAACTCAAGCTACACTGCAAGCCTTACCTCAATCCTCACAGTGCAACAGCTTTCTTCACCTGTTAAAGGGATAGAAAGTTTACAAACAAGCAACGATCCCATTGGCTACCAACAGGGTTCATTCGCCGTAAATTATTTGAGCGAGGAACTCAACATTCATAAGTCCAGACTTGTTCCTCTTAACTCAGCAGAAGATTATGCTAAAGCCTTAAGAGATGGACCCAAAAAGGGTGGTGTTGCTGCAGTGGTTGATGAGCGTGCATATATAGAACTCTTCCTCTCAACCCGATGCGAATTCACCATTGTAGGTCAAGAGTTTACCAAGAGCGGTTGGGGATTTGCCTTTCCACGTGACTCTCCGTTAGCAGTTGACATGTCTACTGCCATTCTAAAACTGTCCGAGACTGGGGACCTCCAGAGGATCCATGACAAATGGCTGAAAGGTAGTGCTTGCAGATCACAAGATGCAAAACTTGCAGTGGACAGACTCCAGCTTAGGAGCTTCTGGGGCCTCTATGCCATATGTGGGTTAGCTTGCCTTGTTGCCCTTTTCATATATGCCATACTTATGGTGCGGCAATTCAGTAAACACTATATAGAGGAGTCTGACTCGTCTGTGCAAAACTCGCGATCTGGACGCCTCCAGACATTCCTTTCATTTGTTGATGAGAAGGAAGAGGACGTGAAAAGCCGTTCCAAAAGAAGGCAAATGGAAATGGCCTCAACTAGAAGCACTTATGAAGATGAATCTCTGAGCAGTTCCAAGAGAAGGCACATAGAACTATCCTCAAACAAGAGTACTATTACAAGTGATCAAGTCTAA 2811 43.22 MVWFLLLMVFLNGIISNGVGTNVSSRPSVVNIGAIFSFNSTIGKVAKFALEAAVQDVNSDPTVLGGTKLKLRTQDTNFSGFGAIMEALQFMEGDTVAIIGPQSSVMAHVVSHIANELQVPLISYAATDPTLFSLQYPFFLMTTHSDLYQMAAIADLVDYYGWREVIAIYVDDDYGRNGIAALGDELTKKRCKISYKAPMYPESSRDDITDVLVKVALTESRILVVHTYTEWGLEVLDVAQYLGMTGSGYVWIATNWLSTVMDTDASLPSNAMNNIQGVLTLRMYTPASELKSNFVSRWSNLTSAGTTNRHVGLSAYGLYAYDTVWVLAHAINAFFNQGGSISFSNDSRLTKLRGGSLHLDAMSIFDGGNLLLQSILQVNMTGVTGPIKFNSDHSLIRPAYEVINVIGTGVRRIGYWSNYSGLSVVPPAMLYTKPPNRTSTNQRLYDAIWPGQAAQTPRGWVFPSNGRQLIIGVPDRVSYREFISRVKGTDMFKGYCIDVFTAALSLLPYAVPYKLVPFGDGIHNPSCTDLVRLITTGVYDAAIGDIAIVTNRTRMVDFTQPYIESGLVVVAPIKTSNSNAWAFLKPFSKNMWIVTGTFFLLVGAVVWILEHRINDEFRGPPRRQFVTILWFSFSTLFFAHRENTVSTLGRVVLIIWLFVVLIINSSYTASLTSILTVQQLSSPVKGIESLQTSNDPIGYQQGSFAVNYLSEELNIHKSRLVPLNSAEDYAKALRDGPKKGGVAAVVDERAYIELFLSTRCEFTIVGQEFTKSGWGFAFPRDSPLAVDMSTAILKLSETGDLQRIHDKWLKGSACRSQDAKLAVDRLQLRSFWGLYAICGLACLVALFIYAILMVRQFSKHYIEESDSSVQNSRSGRLQTFLSFVDEKEEDVKSRSKRRQMEMASTRSTYEDESLSSSKRRHIELSSNKSTITSDQV* 937
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18313460 18318429 + Vvi7g1211 Vvi7g1211 790077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1211 936 SUPERFAMILY Periplasmic binding protein-like I 25 461 IPR028082 -
Vvi7g1211 936 MobiDBLite consensus disorder prediction 891 936 - -
Vvi7g1211 936 PIRSF IGluLR_plant 1 936 IPR017103 -
Vvi7g1211 936 CDD GluR_Plant 467 809 - -
Vvi7g1211 936 Pfam Bacterial extracellular solute-binding proteins, family 3 517 810 IPR001638 -
Vvi7g1211 936 CDD PBP1_GABAb_receptor_plant 31 426 IPR044440 -
Vvi7g1211 936 Gene3D - 742 816 - -
Vvi7g1211 936 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 43 59 - -
Vvi7g1211 936 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 103 131 - -
Vvi7g1211 936 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 320 332 - -
Vvi7g1211 936 Gene3D - 580 718 - -
Vvi7g1211 936 SUPERFAMILY Periplasmic binding protein-like II 447 811 - -
Vvi7g1211 936 Gene3D - 145 422 - -
Vvi7g1211 936 MobiDBLite consensus disorder prediction 891 905 - -
Vvi7g1211 936 Pfam Ligand-gated ion channel 811 842 IPR001320 GO:0015276|GO:0016020
Vvi7g1211 936 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 927 - -
Vvi7g1211 936 Gene3D - 48 397 - -
Vvi7g1211 936 PANTHER GLUTAMATE RECEPTOR 3.6 10 927 - -
Vvi7g1211 936 Gene3D - 453 579 - -
Vvi7g1211 936 SMART GluR_14 470 811 IPR001320 GO:0015276|GO:0016020
Vvi7g1211 936 Pfam Receptor family ligand binding region 49 407 IPR001828 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g1211 Vvi18g71 ECH
Vvi3g300 Vvi7g1211 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1211 K05387 - vvi:100262768 1853.57