Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1220 ATGACTCGTTCTTCAAGATTCCTGAGCAGCTGGAACTCATCGGCAGCGGAACCCCCGGAGGCAGTGGAGGTCGAGTCCGATTTCGTCGTGATCCTTGCGGCGCTGCTATGCGCTCTGATATGCGTGGTGGGTCTCATCGCCGTAGCTCGCTGCGCTTGGCTTCGGCGGGGCTCAGCGGGAGGGGCGCGCGCGTCGGCCACGCAACCGGCGGCGAACAAGGGGCTGAAGAAGAAGATCCTTCAGTCGCTTCCGAAGCTGACCCACGACGCCACAGTGAGCGGCAAGTTCGCGGAGTGCGCCATATGCTTGGCGGAGTTCGTGGAGGGTGACGAGATCCGAGTTCTGCCGCAGTGCGGGCATGGGTTCCATGTGTTGTGCGTGGACACATGGCTGAGCTCCCACTCCTCCTGCCCGTCGTGCCGGCAGATACTGGTCGTCACCAGGTGCCGGCAGTGCGGCAAGTTCCCCGCAATTTCCGGCACGGCAACGTCGGACGCGGAACTCAAGGCAAGGGAACAGGGTACTGCTGATAATGGGTTTCTACCATAA 549 62.11 MTRSSRFLSSWNSSAAEPPEAVEVESDFVVILAALLCALICVVGLIAVARCAWLRRGSAGGARASATQPAANKGLKKKILQSLPKLTHDATVSGKFAECAICLAEFVEGDEIRVLPQCGHGFHVLCVDTWLSSHSSCPSCRQILVVTRCRQCGKFPAISGTATSDAELKAREQGTADNGFLP* 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18383555 18384104 + Vvi7g1220 Vvi7g1220 790086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1220 182 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Vvi7g1220 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 145 IPR013083 -
Vvi7g1220 182 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 171 - -
Vvi7g1220 182 CDD RING-H2_PA-TM-RING 98 141 - -
Vvi7g1220 182 SMART ring_2 99 140 IPR001841 -
Vvi7g1220 182 SUPERFAMILY RING/U-box 98 147 - -
Vvi7g1220 182 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 171 - -
Vvi7g1220 182 Pfam Ring finger domain 98 141 IPR001841 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1220 - - vvi:100260977 348.591