Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1290 ATGGCAACTACGGTGCCGATCGCCTATCAGGGCAATACGTCGGCATCAGTGCCGGACTGGTTGAACAAGGGCGACAACGCATGGCAGATGATATCGGCCACCCTTGTGGGCTTGCAGGGCATTCCGGGGCTGATGATACTGTACGGTGGGTTGGTGAAGAAGAAGTGGGCGGTGAACTCGGCCTTCATGACTTTCTACGGCTTCGCCGCGGTGATCCTCTGCTGGGTGAGCTGGGCCTATAGGATGTCCTTCGGCGACCAGCTCCTCCCCTTCTGGGGCAAGGCTGGGGCGGCGCTGGGGCAAAAGTTCCTGCTAAAGCAAGCGGCGCTGCCGGCGACAACGCATCACTATAAGAATGGCACGGTGGAAACAGCGATGATCACGCCATTTTATCCGATGGCGTCGATGGTATGGTTCCAGGGCGTGTTCGCGGCGGTGGCGGTGATTCTGTTGGCGGGGGCGGTGCTGGGGAGGATGAATATAAGGGCGTGGATGGTGTTTGTGCCGCTGTGGCTGACATTTTCCTACACTGTTGGGGCTTTCAGCTTGTGGGGTGGTGGCTTCTTGTTTCATTGGGGTGTCATGGACTACTCTGGTGGTTATGTCATTCATGTCTCATCTGGGATTGCTGGCTTCACTGCTGCTTACTGGGTGGGGCCAAGATCCAAAAGGGACAGGGAGAGGTTTCCACCAAACAATGTGCTGCTGATGCTTGCTGGGGCGGGGCTGCTGTGGTTGGGATGGGCAGGGTTCAACGGAGGAGACCCTTACGCAGCTAACACCGACTCCTCCATGGCAGTTCTCAACACCAACATCTGTGCCGCCACCAGCCTCCTCGTCTGGACCTGGCTTGATGTTATCTTCTTCAAGAAGCCTTCTGTCATTGGTGCTGTTCAGGGCATGATCACCGGCCTTGTCTGCATCACCCCTGCTGCAGGACTCGTTCAAGGATGGGCGGCCATATTAATGGGGATCCTCTCCGGCAGCGTTCCATGGTTCACCATGATGATCCTCCACAAGCGCTCCACTCTCCTCCAGCACGTCGACGACACTCTCGGAGTCCTCCACACCCACGCTATCGCCGGCTACCTCGGCGGCATCCTCACAGGATTCTTCGCCGAGCCTGAGCTCTGCAGCCTCTTCCTCCCCGTCACCAATTCCCGCGGCGCTGTCTACGGCGGCTCCGGCGGCATTCAGATCCTCAAGCAGATCGCCGGCGGCGCCTTCATCATCGCGTGGAACGTAGTGATGACTTCCATAATATGTATAGTGGTGAAGTTAGTGGTTCCGCTGAGGATGCCGGAGGAGGAGCTGCTGATCGGCGACGACGCCGTGCACGGGGAGGAAGCGTACGCCCTTTGGGGAGACGGAGAGAAGTATGATTCCTCGAAGCATGGGTTTTATTCTGATGATACTCAGCACCAGAGGCCTTACAGTGGAGCCACTGACGCGGTTTAG 1458 57.82 MATTVPIAYQGNTSASVPDWLNKGDNAWQMISATLVGLQGIPGLMILYGGLVKKKWAVNSAFMTFYGFAAVILCWVSWAYRMSFGDQLLPFWGKAGAALGQKFLLKQAALPATTHHYKNGTVETAMITPFYPMASMVWFQGVFAAVAVILLAGAVLGRMNIRAWMVFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDYSGGYVIHVSSGIAGFTAAYWVGPRSKRDRERFPPNNVLLMLAGAGLLWLGWAGFNGGDPYAANTDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPAAGLVQGWAAILMGILSGSVPWFTMMILHKRSTLLQHVDDTLGVLHTHAIAGYLGGILTGFFAEPELCSLFLPVTNSRGAVYGGSGGIQILKQIAGGAFIIAWNVVMTSIICIVVKLVVPLRMPEEELLIGDDAVHGEEAYALWGDGEKYDSSKHGFYSDDTQHQRPYSGATDAV* 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19728661 19730803 + Vvi7g1290 Vvi7g1290 790156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1290 485 PANTHER AMMONIUM TRANSPORTER MEP2 14 475 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vvi7g1290 485 MobiDBLite consensus disorder prediction 465 485 - -
Vvi7g1290 485 Gene3D Ammonium transporter AmtB like domains 3 454 IPR029020 -
Vvi7g1290 485 PANTHER AMMONIUM TRANSPORTER 14 475 - -
Vvi7g1290 485 Pfam Ammonium Transporter Family 27 451 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vvi7g1290 485 SUPERFAMILY Ammonium transporter 20 433 - -
Vvi7g1290 485 ProSitePatterns Ammonium transporters signature. 196 221 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vvi7g1290 485 TIGRFAM amt: ammonium transporter 25 451 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1290 K03320 - vvi:100259492 970.304