Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g1346 ATGATCATGTATAAAGAGCCGCTTCTGACAAAGAGGATGAACACTACCTCCCAGATTGCCATTGTTGGTGCTAATGTCTGCTCCATTGAGAGCCTTGACTATGAGATTGTTGAAAATGAACTATTTAAGCAAGACTGGAGGTCAAGGAAGAAGGCTCAGATATTTCAGTATGTGGTACTCAAGTGGGCACTTGCACTTCTTATAGGGCTTGGTACTGGACTTGTTGGCTTCTTCAACAATATTGCAGTTGAGAATATTGCTGGTTTCAAACTGCTGCTGACTAGTGATTTCATGTCTCAGAAAAAATATTTCAAGGCTTTTGCAGCATATGCTAGCTGCAATATAGGTTTGGCAGCTGCTGCAGCAGCCCTTTGTGCTTTCATTGCTCCAGCAGCAGCAGGGTCTGGTATTCCTGAAGTGAAAGCATATCTCAATGGTATAGATGCTCATTCAATATTGGCTCCAAGTACCCTCTTTGTAAAGATTTTTGGTTCCATTCTTGGTGTTTCTGCTGGATTTGTGGTGGGTAAGGAAGGGCCAATGGTGCACACGGGTGCTTGCATTGCCTCTCTTCTTGGGCAGGGAGGCTCTCGCAAGTATCATTTAACGTGGAGTTGGCTAAAATACTTCAAAAATGATCAGGACAGACGAGACTTGATCACTTGCGGGGCTGCTGCCGGGGTGGCTGCTGCCTTCCGTGCTCCAGTGGGTGGTGTCCTCTTTGCCCTTGAAGAAGCAGCTTCATGGTGGCGAAGTGCTCTTCTTTGGAGGACATTTTTCACAACAGCTGTGGTTGCTATTGTTTTGAGAGCTTTCATAGAATATTGCTGGACTGGAAAATGTGGGCTATTCGGGCAAGGAGGTCTGATAATGTATGATGTCAGTGCTGCTACAGAAACATACGGTGTCCCAGATATACTAGCAGTACTATTTCTAGGAGTCATTGGCGGCATTTTTGGAAGCCTATACAATTATCTTGTGGACAAGGTTCTTCGAACTTATAGCATCATCAATGAAAAAGGTGCCCGTTCCAAAATATTACTTGTTGTTACTATCTGCATCTTGACAACCTGTTGCTCCTTTGGCCTGCCATGGTTTTCAAAGTGTATAGCCTGCCCTGCTGATCTGGCTGTGACCTGCTCCACAGAATCTGGCAACTTTAAACGCTTCCAGTGCCAATCAGGTTACTACAATGACCTCGCTTCCCTCTTCCTGAATACTAATGATGACGCTATTCGCAACCTATTCAGCACCAGCACTAGGCATGAATTTCGTATTTCCAGCCTCTTCATCTTCTTTGCTGCCATCTACTGTCTTGGCATTATCACGTATGGTATTGCTGTCCCCTCCGGTCTCTTCATTCCAGTTATACTAGCTGGAGCTTGCTATGGTCGTCTTGTTGGGAGACTCTTTGCATCTATATCTAAACTTGATACGGGACTCTTTGCCCTCCTTGGAGCTGCATCCTTCCTCGGTGGCACCATGAGAATGACAGTTTCCCTGTGTGTAATCCTGCTAGAGCTTACCAATGATCTACTATTGCTGCCCCTTGTCATGCTTGTTCTCCTTGTCTCAAAAACAGTGGCTGATAGCTTCAACAAAGGTGTCTATGACCAGATAGTAAAACTGAAGGGATTGCCTTACATGGAGGCCCATGCAGAGCCCTACATGAAGCATTTGGCTGCACGTGATGTTGTTTCAGGTCCATTGGTTACCTTCTCTGGCATTGAAAAGGTGGGGAACATAATGCATGCTTTGAGGACTACAGGGCATAACGGGTTCCCTGTGATTGACGAGCCGCCTTTCACAGATGCACCAGAACTGTGTGGACTTGTGTTGAGGTCTCATTTGCTTGTTCTACTAAAGGGGAAGAGTTTCTCTAGGAATCAGGTGCATTGTGGAGGGGAGATCTTGAGAAAGTATGCAGCATTGGACTTTGCCAAGGCAGGATCAGGAAAGGGGGTGAAACTGGAGGATTTGAATATTGAAGAGGAAGAGATGGAAATGTATGTCGATCTCCATCCTATAACAAATGCATCTCCATACACCGTGGTTGAGACGATGTCGTTAGCAAAAGCTGCAATTCTCTTTCGGCAAGTGGGCCTTAGGCACATGTGTGTGGTACCAAAGAGCCAAGGGAGGCCTCCAATTGTTGGAATCCTGACACGGCACGACTTCATGCCAGAGCACATATTGGGACTCTACCCTCATTTGAGTCCTCACAAGTAA 2229 45.9 MIMYKEPLLTKRMNTTSQIAIVGANVCSIESLDYEIVENELFKQDWRSRKKAQIFQYVVLKWALALLIGLGTGLVGFFNNIAVENIAGFKLLLTSDFMSQKKYFKAFAAYASCNIGLAAAAAALCAFIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSILGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKYHLTWSWLKYFKNDQDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIVLRAFIEYCWTGKCGLFGQGGLIMYDVSAATETYGVPDILAVLFLGVIGGIFGSLYNYLVDKVLRTYSIINEKGARSKILLVVTICILTTCCSFGLPWFSKCIACPADLAVTCSTESGNFKRFQCQSGYYNDLASLFLNTNDDAIRNLFSTSTRHEFRISSLFIFFAAIYCLGIITYGIAVPSGLFIPVILAGACYGRLVGRLFASISKLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNDLLLLPLVMLVLLVSKTVADSFNKGVYDQIVKLKGLPYMEAHAEPYMKHLAARDVVSGPLVTFSGIEKVGNIMHALRTTGHNGFPVIDEPPFTDAPELCGLVLRSHLLVLLKGKSFSRNQVHCGGEILRKYAALDFAKAGSGKGVKLEDLNIEEEEMEMYVDLHPITNASPYTVVETMSLAKAAILFRQVGLRHMCVVPKSQGRPPIVGILTRHDFMPEHILGLYPHLSPHK* 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20707637 20715321 - Vvi7g1346 Vvi7g1346 790212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g1346 742 SUPERFAMILY CBS-domain pair 553 727 IPR046342 -
Vvi7g1346 742 PRINTS Chloride channel signature 130 147 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi7g1346 742 PRINTS Chloride channel signature 161 180 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi7g1346 742 PRINTS Chloride channel signature 225 244 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi7g1346 742 PRINTS Chloride channel signature 448 468 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi7g1346 742 PRINTS Chloride channel signature 480 496 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi7g1346 742 PRINTS Chloride channel signature 498 517 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi7g1346 742 PRINTS Chloride channel signature 536 550 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi7g1346 742 SUPERFAMILY Clc chloride channel 39 551 IPR014743 -
Vvi7g1346 742 Gene3D - 550 732 IPR046342 -
Vvi7g1346 742 Pfam CBS domain 680 726 IPR000644 -
Vvi7g1346 742 CDD CBS_pair_voltage-gated_CLC_euk_bac 562 729 - -
Vvi7g1346 742 CDD ClC_6_like 30 549 - -
Vvi7g1346 742 Gene3D Clc chloride channel 53 549 - -
Vvi7g1346 742 PRINTS Plant CLC chloride channel signature 35 43 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi7g1346 742 PRINTS Plant CLC chloride channel signature 246 254 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi7g1346 742 PRINTS Plant CLC chloride channel signature 260 270 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi7g1346 742 PRINTS Plant CLC chloride channel signature 278 285 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi7g1346 742 PRINTS Plant CLC chloride channel signature 400 416 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vvi7g1346 742 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 4 742 - -
Vvi7g1346 742 Pfam Voltage gated chloride channel 118 530 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi7g1346 742 ProSiteProfiles CBS domain profile. 676 739 IPR000644 -
Vvi7g1346 742 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 4 742 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g1346 K05016 - vvi:100259734 1383.24