Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g136 ATGGGCTCGGAGGCAGTTCCTTCGGAATCTAGAACTACAAGGTACAAATGTTTGGCCTGCTTCAGGCAATATAAGAAGAAGGAGCATCTAGTTGAGCACATGAGGGTATCATATCATTCTGTGCATCAGCCAAAATGTGGGGTCTGCCAGAAGCAGTTCAAATCTTTCCAGTCACTAAGGGAACACCTTACTGGTAATTTGCCCAAGAAAAATTGTTTGAAGATATTCTCTGAGCAAGGTTGCAACTACTGTTTGAAAATCTTCAAGAATGCTGATTCTCTCAGTGAGCATAAAGAAATGTGTCAATTACCTGTGCCTGTTACAATAGAAAAAATCAGGATGCCATCTACAGAATCTCAAATTGATTTTTCAGATTCTATTAATAGAGACCACACTAGCAGAGGTCTTGAAGCAATTGCCATTGACTGTGAAAAGGTTGGTGGCGGAAGTGATGGATCGCTTGACCTTTGTGCTAGGGTATGCCTCATAGATGAAGATGAGAATATAATTTTTCACACTTATGTGCAGCCACAAATTCCTGTCACCAATTACAGATATGAGTTAACTGGGATTACTGAAGCACATCTGAGAGATGCCATGCCACTAAAGGAAGTGCGGGAAAAAGTTATGGAAGTTTTACGAAATGGAGAATCCATTGGGCGACTGCGTTTGGATGGTGGGAAGGGCAGACTTCTTGTGGGTCATGACCTACGCCATGACCTGGATTGCTTGAGAATGCACTATCCTGATCACTTGCTGAGGGATACTGCAAAATACCTCCCCTTGATGAAAACAAATTTAGTCAGCTTCTCCCTGAAGTCGCTCACTCAAAAATATCTTGGGTACGATATCCAGTCAGGGATGCATGATCCATATGAAGATTGTGTATCTGTAATGAGGCTGTACAAGAGAATGCAATCTCAAGATCACTCAGACGAAGGAATTGGAACAGCCATTCATTACAGGCTGAGAGTAATGATCTTTGGGCACAATAGAACTGATACAGGGGGTTCGATGAGAACATGA 1026 42.2 MGSEAVPSESRTTRYKCLACFRQYKKKEHLVEHMRVSYHSVHQPKCGVCQKQFKSFQSLREHLTGNLPKKNCLKIFSEQGCNYCLKIFKNADSLSEHKEMCQLPVPVTIEKIRMPSTESQIDFSDSINRDHTSRGLEAIAIDCEKVGGGSDGSLDLCARVCLIDEDENIIFHTYVQPQIPVTNYRYELTGITEAHLRDAMPLKEVREKVMEVLRNGESIGRLRLDGGKGRLLVGHDLRHDLDCLRMHYPDHLLRDTAKYLPLMKTNLVSFSLKSLTQKYLGYDIQSGMHDPYEDCVSVMRLYKRMQSQDHSDEGIGTAIHYRLRVMIFGHNRTDTGGSMRT* 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1660667 1669267 - Vvi7g136 Vvi7g136 789002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g136 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
Vvi7g136 341 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 10 317 - -
Vvi7g136 341 Gene3D - 136 319 IPR036397 GO:0003676
Vvi7g136 341 SMART c2h2final6 15 39 IPR013087 -
Vvi7g136 341 SMART c2h2final6 79 99 IPR013087 -
Vvi7g136 341 SMART c2h2final6 44 64 IPR013087 -
Vvi7g136 341 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
Vvi7g136 341 SUPERFAMILY beta-beta-alpha zinc fingers 14 63 IPR036236 -
Vvi7g136 341 CDD REX4_like 139 303 IPR037431 GO:0006364|GO:0008408
Vvi7g136 341 Pfam Exonuclease 139 302 IPR013520 -
Vvi7g136 341 SUPERFAMILY Ribonuclease H-like 139 306 IPR012337 -
Vvi7g136 341 SMART exoiiiendus 137 311 IPR013520 -
Vvi7g136 341 Gene3D Classic Zinc Finger 2 66 - -
Vvi7g136 341 PANTHER EXONUCLEASE FAMILY PROTEIN 10 317 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g136 K18327 - vvi:100259575 651.744