Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g158 ATGATTCCGTGGGGTGGCATCAGTTGCTGTTTGAGCGCAGCTGCTCTTTACCTTCTTGGAAGGAGCAGTGGAAGGGATGCGGAGGCGTTGAAGTCGGTTACTCGAGTTCAGCAATTGAAGGATTTGGTACAGTTGCTAGATACAGCATGCAAAGTATTACCTTTAGTCGTTACGGTATCTGGAAGAGTTGGCTCTGACACACCAATCAAATGCGAGTATAGTGGGTTACGAGGTGTAATTGTGGAGGAAACGGCAGAGCAACATTTTCTGAAACACAATGATGCTGGTTCGTGGATACAAGATTCGGCTTTGATGTTGTCCATGAGTAAGGAGGTTCCCTGGTACTTGGATGATGACACAGGTCGTGCATATATAGTGGGAGCCCGAGGTGCCACGGGTTTGGTATTGACAGTTGGAAGTGAAGTGTTTGAGGAGTCAGGGAGATCCCTTGTACGTGGAACACTAGATTATCTCCAAGGTCTCAAGATGCTCGGAGTGAAGCGAATTGAGCGGGTTCTTCCAACTGGCACACCTTTGACTGTTGTTGGTGAGGCTATCAAAGATGATGTTGGAACAATTCGTATTCAGCGGCCCCATAAAGGACCATTTTATGTCTCTCCCAAAAGTATTGATCATCTTGTTGCAAATCTTGGCAAATGGGCAAGGTGGTACAGGTATGCCTCTCTGGGGTTTACAGTATTTGGAGTTTATCTGATTGCTAAGAGTGCTATCCAATATGTCATGGAAAGAAAGCGTTGTTGGGAATTGCGTAAAAGGGTTCTTGCTGCTGCTTCTAAAAAATCAGGGCAAGACAGTGAAGATCCTGATGAAAAGGATGAGAATGGATCAGATAATACGAAAAGGGACAGACTAATGCCTGATCTATGTGTGATCTGCCTAGAGCAGGAATACAATGCTGTTTTTGTCCCGTGTGGCCATATGTGCTGTTGTACAATGTGCTCTTCTCAGTTGACCAACTGTCCACTTTGCCGACGACGGATCGAGCAGGTAGTAAGGACTTTCCGTCACTAA 1032 45.83 MIPWGGISCCLSAAALYLLGRSSGRDAEALKSVTRVQQLKDLVQLLDTACKVLPLVVTVSGRVGSDTPIKCEYSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDDTGRAYIVGARGATGLVLTVGSEVFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPTGTPLTVVGEAIKDDVGTIRIQRPHKGPFYVSPKSIDHLVANLGKWARWYRYASLGFTVFGVYLIAKSAIQYVMERKRCWELRKRVLAAASKKSGQDSEDPDEKDENGSDNTKRDRLMPDLCVICLEQEYNAVFVPCGHMCCCTMCSSQLTNCPLCRRRIEQVVRTFRH* 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1821477 1830545 + Vvi7g158 Vvi7g158 789024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g158 343 MobiDBLite consensus disorder prediction 265 286 - -
Vvi7g158 343 Pfam E3 Ubiquitin ligase 87 236 IPR022170 GO:0004842|GO:0006996|GO:0016567
Vvi7g158 343 CDD RING-HC_LRSAM1 295 334 - -
Vvi7g158 343 SUPERFAMILY RING/U-box 295 337 - -
Vvi7g158 343 Pfam Zinc finger, C3HC4 type (RING finger) 294 337 - -
Vvi7g158 343 ProSiteProfiles Zinc finger RING-type profile. 296 331 IPR001841 -
Vvi7g158 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 342 IPR013083 -
Vvi7g158 343 PANTHER - 1 310 IPR044231 GO:0004842|GO:0016567
Vvi7g158 343 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SP1-RELATED 1 310 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g158 K15688 - vvi:100247743 685.256