Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g176 ATGAGTTTATTTTGGTTCTTATTATTGGAGCTTTGTTCTACCATCTTCACCACCAACCTGCCACCACCGGTCTTCAACCCGGAAATCTTTTTAAAAAAAAGAGTAAAACCATCTTTTGATCTTTGGGTGGATATTTTAGGCAGTGGGCTTTGTTGGTGGGCTCCCAAGACACTGACTTCCTTTTCCTTCTCCTCCGCCCAATACAACCTGGCTCCATGTCCTCTCGACTTCGAACCCCTCCTCAATGTCACCACCTTCGACGTAAACGCCTCTACCCAGTGTCAGTACGTTATCCAGGGCCTCCGCCTCGTTCTGGCCACCTACCTCCAGAGCACTGGGTCGTTCCTCCCTCCGATCAACTCGTCTGAGTCGTGTTGGGATTCGTACCAGAGCGTGGTCAACAACTTCACCTCCAATTTCAATATTCGATCCGATTGCGGCTTCGAAACCACCTGGATCTCTGAGGGTTGTATGAACATCACCACCCGATCCCAATTCGATGCTGTGGTGTCGCAGGCCACGCGAGCTGATATTGTCGCGTCGTGCAATCAGTCGCTGGAGAACAGCTCGCCCTGTGCCACCTGCACCACCAGCTTGTCTAATCTTCAGGCGGTATATCTGACCGGTTCCAGCGTCGGGAATCTCACTGATTGTACGGCCTACCCGTCGATTTACGCCGCCGGCTTCGCCAACTACCTTGGACCCACCGATCCCGGGACGGCCAAGTGTTTGTTTAACCTCAATTTTGCGTCTGGTGGTTCAGGGAATAAGCGGCGAGGTGTTGTGATTGTGGTGGTTGTGGTGGTGTGTAGTATTGTGAATATTGAAATGGGTTTGGAGTCGATCAGTGGGAGTACTACATTGATTAAGTTCACCATTGATGAGATTAGGCAGGCTACTAGGAATTTCACTAGAGACAACATCATTGGAAGAGGAGGTTATGGCAATGTGTACAAGGGGGTATTGAAGGATGGCTCTGAAGTTGCATTCAAAAGGTTCAAGAACTGCTCTGCTGCTGGTGATACAAATTTTGCCCATGAGGTTGAGGTTATTGCGAGTGTGAGGCATGTAAATTTAGTCGCTTTGAGAGGGTATTGTACTGCCACGACTCCATTAGAGGGTCACCAGAGGATAATTGTGTGTGATTTGATGAAGAATGGCAGTCTTCATGACCATCTTTTTGGGTCAACTGAAAAACTTAGTTGGCCTCTTCGTCAAAAGATTGCACTTGGAACAGCTCGAGGGTTGGCTTATTTGCATTCTGGTGCTCAACCAGGTATTATCCATAGGGATATCAAAGCCAGTAATATACTTTTGGATGAGAAGTTTGAGCCAAAGGTGGCAGATTTTGGGCTTGCGAAGTTTACACCCGAGGGAATGACTCATTTGAGCACTAGGGTTGCAGGGACAATGGGTTATGTTGCCCCAGAGTATGCATTGTATGGACAGTTGACAGAGAGGAGTGATGTGTACAGCTTTGGTGTTGTGCTTCTTGAGCTTTTAAGTGGGAAGAAGGCTCTCATGGTGATTGGTGAGAACCAGCCCTCTCTTGTGACTGATTGGGCTTGGTCATTGGTGAGGAAGGGGAGGGCTATAGATGTTGTTGATAATAGTATGCCAGAGTTGGGTTCGCCAGAAGTTATGGAGAAGTATGTATTGGTTGCAGTTCTTTGTTCTCATCCACAGCTATATGCTCGGCCAGCAATGGATCAGGTTGTGAAAATATTGGAGACAGATTTGCCAGTTCCCTCGATCCCAGAACGCCCAATTTCCATTGTGGCTGAGATGGATGATATTGAGAGATCTGTGAGCAGCAGTGATATGGGTTGTATTTCTTCTTCAGCTGTGAATTGTAAAGCTACGATTTCTGGAGATAGAGAAAGACGTAAACATGAAATTTGCTGGTGA 1908 47.38 MSLFWFLLLELCSTIFTTNLPPPVFNPEIFLKKRVKPSFDLWVDILGSGLCWWAPKTLTSFSFSSAQYNLAPCPLDFEPLLNVTTFDVNASTQCQYVIQGLRLVLATYLQSTGSFLPPINSSESCWDSYQSVVNNFTSNFNIRSDCGFETTWISEGCMNITTRSQFDAVVSQATRADIVASCNQSLENSSPCATCTTSLSNLQAVYLTGSSVGNLTDCTAYPSIYAAGFANYLGPTDPGTAKCLFNLNFASGGSGNKRRGVVIVVVVVVCSIVNIEMGLESISGSTTLIKFTIDEIRQATRNFTRDNIIGRGGYGNVYKGVLKDGSEVAFKRFKNCSAAGDTNFAHEVEVIASVRHVNLVALRGYCTATTPLEGHQRIIVCDLMKNGSLHDHLFGSTEKLSWPLRQKIALGTARGLAYLHSGAQPGIIHRDIKASNILLDEKFEPKVADFGLAKFTPEGMTHLSTRVAGTMGYVAPEYALYGQLTERSDVYSFGVVLLELLSGKKALMVIGENQPSLVTDWAWSLVRKGRAIDVVDNSMPELGSPEVMEKYVLVAVLCSHPQLYARPAMDQVVKILETDLPVPSIPERPISIVAEMDDIERSVSSSDMGCISSSAVNCKATISGDRERRKHEICW* 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1983341 1994011 - Vvi7g176 Vvi7g176 789042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g176 635 Pfam SPARK 71 214 IPR043891 -
Vvi7g176 635 Pfam Protein kinase domain 304 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g176 635 CDD STKc_IRAK 309 577 - -
Vvi7g176 635 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RKF3-RELATED 274 630 - -
Vvi7g176 635 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RKF3-RELATED 62 273 - -
Vvi7g176 635 Gene3D Transferase(Phosphotransferase) domain 1 384 581 - -
Vvi7g176 635 SMART serkin_6 303 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g176 635 ProSiteProfiles Protein kinase domain profile. 303 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g176 635 PANTHER OS01G0750732 PROTEIN 62 273 - -
Vvi7g176 635 PANTHER OS01G0750732 PROTEIN 274 630 - -
Vvi7g176 635 SUPERFAMILY Protein kinase-like (PK-like) 288 604 IPR011009 -
Vvi7g176 635 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
Vvi7g176 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
Vvi7g176 635 Gene3D Phosphorylase Kinase; domain 1 272 382 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76748 PF00069 Pkinase 4.50E-43 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g176 - - vvi:100852842 1084.32