Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g209 ATGGGTAGTGGTGGAGATGGTGAGAGGATGAGGGTTGATCTCGAGGGAGATGGGTTGCAGAGTAAAAACATCCAAGATGAAAATGATGATCTGTATACTGAACTATGGCTTGGATGTGCTGGGCCTCTTGTCAACATTCTGCGTGCCGGCCAGAAGGTTGTCTACTTCCCTCAAGGTCACATAGAACAGGTTGAGGCCTATACAAACCAGGATGGCCAAATGGAAATGCCAATCTACAATTTACCTTCTAAGATTTTCTGCAAAGTTGTTTACGTTCAGCTAAAGGCTGAAGCTTGTACAGATGAGGTGTTTGCGCAAGTTACTTTGCTTCCAGAGGCAAAGCAAGAGTGGCAAAGTCCAGATCATGGAAATTCTCAGTTTTTCCCTCGAAGAACTCATTCATACTCCTTTAGCAAGACTCTCACTCCGTCTGATACAAACACACATGGTGGGTTCTCTGTTCCGAAGCGACATGCTGATGAATGTCTTCCACCTCTGGACATGACCCAGCAACCCCCAGTACAGGAACTGATTGCAAAGGACTTGCATGGGACTGAATGGCGCTTTCGCCATATATTTCGAGGTCAGCCAAAGCGGCACTTGCTTACTAGTGGTTGGAGTCAATTTGTGACTTCAAAGAAGCTTGTTGCTGGAGATGCCTGCATTTTCCTTAGGGGAGCAAATGGTGAACTTCGTGTTGGGGTCCGGAGAGCTACAAGATTACAAAACAATGTATCAGCATCAGTACTATCCGGCCACAGCATGCAACATGGCATACTTGCAAGTGCCTTCCATGCCATTTCTACGGGAACCATGTTTACTGTATATTTCCGTCCTTGGACTAGTCCTGAATTTATTATTCCTTATGACCAATACATAAAATCTGCTGAAAACAATTACTCAGTTGGAACAAGATTCAGAATGCTGTTTGAAGGTGAAGAATGTTCACAGCAAAGATGTGCAGGTACTATAGTTGGCATTGAAGATGTTGATGCCATTAGGTGGCCCAATTCAGAATGGAGACGTTTCAAGGTGCAATGGGATACATCAGATATTACTCCATGTCCTGAAAGGGTGGCTGCATGGAACATTGAGCCAATAGAATTCATTAAGAAGAAGCATACTTCTATTCTACCCCAACTAAAGAGGGCACGCCCAACTGATCCACTGTGTCCTGCTATTCCTATATTGGTTGGGGATGTTGAGCACACTAAAATTCAATCAGGGGTCTTGCAAGGTCAAGAAAACGACGATATAGGTGCTCACAAGCCAGATACATCAAAACTGCCATCATTGCTGGTTGTTCCTCCACCAAATTCCGATTGGGGTCCTCAGCACTTCCCAATGCATGACCCATTCTATCAATGTCCTGGCAAAACAATATTGTTCCAGGGTGAAAACCCTCTGAGTTCTGGGATTGCTAATGGCTGCTCCCTAACATTTACCTATTGTGGAGCCTGTGATAATGTTGGAGGGAGCAGAAACTTGTCTTTTGCAAACCTCGACTCCAGCAATTGTGAGTTCCAGGATTGGAGGGCTCTAGAGCCAAAGGGCAATGAAGCTTCATTTGCCCAACAGAACCGCATTGACAAATTCAAGCTTTTTGGTGTAAATTTAATTAATAGTCCAGCGGAGCTCCCTTCACCACAAGTTGCCAGTTCCAGTGAGCTGCAAAGTCCTTGTTCCATTCCTCCAACATCTCAGTCAAGCATTTCTGAATCTATCCAAGCTTCAGAGCCATCTAAGAGTGTTTCTGGTGACCTTTCAGACAAACAGTGCAAGAACTGTTGCTCGGTCATGGTCAGGAGCTGCACAAAGGTACTCAAGTATGGAACTGCCCTTGGAAGATCAATTGATCTTGCACGCTTTGACGGGTATGATGAGCTCATCATCGAGCTTGACCAGATGTTTGATTTCGGAGGAAGTTTGATGGATGGCAGCTGCAGGTGGCATGTAACATACACAGATGATGAGGGTGACATGATGCTGCTCGGAGATTACCCATGGCAGGAATTCCGGTCTATGGTGCAGAGGATCTTCATATGTCCAAAGGAAGAGACTGAGAGACTGAATTCAGCTACACCCTCATGA 2091 45.24 MGSGGDGERMRVDLEGDGLQSKNIQDENDDLYTELWLGCAGPLVNILRAGQKVVYFPQGHIEQVEAYTNQDGQMEMPIYNLPSKIFCKVVYVQLKAEACTDEVFAQVTLLPEAKQEWQSPDHGNSQFFPRRTHSYSFSKTLTPSDTNTHGGFSVPKRHADECLPPLDMTQQPPVQELIAKDLHGTEWRFRHIFRGQPKRHLLTSGWSQFVTSKKLVAGDACIFLRGANGELRVGVRRATRLQNNVSASVLSGHSMQHGILASAFHAISTGTMFTVYFRPWTSPEFIIPYDQYIKSAENNYSVGTRFRMLFEGEECSQQRCAGTIVGIEDVDAIRWPNSEWRRFKVQWDTSDITPCPERVAAWNIEPIEFIKKKHTSILPQLKRARPTDPLCPAIPILVGDVEHTKIQSGVLQGQENDDIGAHKPDTSKLPSLLVVPPPNSDWGPQHFPMHDPFYQCPGKTILFQGENPLSSGIANGCSLTFTYCGACDNVGGSRNLSFANLDSSNCEFQDWRALEPKGNEASFAQQNRIDKFKLFGVNLINSPAELPSPQVASSSELQSPCSIPPTSQSSISESIQASEPSKSVSGDLSDKQCKNCCSVMVRSCTKVLKYGTALGRSIDLARFDGYDELIIELDQMFDFGGSLMDGSCRWHVTYTDDEGDMMLLGDYPWQEFRSMVQRIFICPKEETERLNSATPS* 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2256655 2262296 - Vvi7g209 Vvi7g209 789075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g209 696 MobiDBLite consensus disorder prediction 549 591 - -
Vvi7g209 696 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 694 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi7g209 696 ProSiteProfiles B3 DNA-binding domain profile. 137 239 IPR003340 GO:0003677
Vvi7g209 696 Gene3D - 597 691 - -
Vvi7g209 696 Gene3D - 299 372 - -
Vvi7g209 696 Pfam Auxin response factor 263 343 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi7g209 696 CDD B3_DNA 136 237 IPR003340 GO:0003677
Vvi7g209 696 SUPERFAMILY DNA-binding pseudobarrel domain 127 266 IPR015300 -
Vvi7g209 696 Pfam AUX/IAA family 643 682 IPR033389 -
Vvi7g209 696 Gene3D - 135 239 IPR015300 -
Vvi7g209 696 ProSiteProfiles PB1 domain profile. 602 684 IPR000270 GO:0005515
Vvi7g209 696 SUPERFAMILY CAD & PB1 domains 606 679 - -
Vvi7g209 696 SMART B3_2 137 239 IPR003340 GO:0003677
Vvi7g209 696 Pfam B3 DNA binding domain 137 238 IPR003340 GO:0003677
Vvi7g209 696 PANTHER AUXIN RESPONSE FACTOR 22 694 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15016 PF02362 B3 1.80E-22 CL0405 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g209 - - vvi:100246055 1407.51