Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi7g215 | ATGCCTCCTGAATTGCTGAGAGACGTGTTAATGAGGATAGAAGCATCTGAGAGTACTTGGCCTCCTCGGAAAAATGTGGTTGCTTGTGCTGGTGTGTGCAGAAGTTGGAGAGAAATCACTAAGGAAATTGTGAAAACCCCAGAACTGTCGGGCAAGTTGACGTTCCCCATCTCTTTGAAGCAGCCTGGGCCAAGGGGCTCCCTCCTTCAGTGTTATATAAAGCGGAATCGTAGCAACCAAACATATCATCTCTATCTCGGCTTAAATCAAGCTTCAACTGATGATGGAAAGTTTCTTCTTGCTGCACGGAAGTGTAGACGTCCTACTTGCACAGACTATATCATCTCTCTTAATGCTGATGATGTTTCCAAGGGGAGCACCACTTATATTGGAAAGTTGAGGTCAAATTTTCTGGGAACCAAGTTCACTGTCTATGATGCGCAGCCTCCAAATGCAGGAGCAAGGATTAGTAAATCTCGTTCAACCAGGCGACTGGGTTCAAGACAAGTCTCCCCTAGAGTCCCTGCTGGCAACTATCCTGTAGCCCACATTTCATATGAATTGAATGTCTTGGGTTCCAGGGGTCCAAGGAGAATGCAGTGTGTCATGGATGCCATCCCTGCCAATGCCATTGAGCCAGGAGGAGTGGCCCCCACCCAAACTGAATTTATGAAATGCTGGTTTTGA | 687 | 46.87 | MPPELLRDVLMRIEASESTWPPRKNVVACAGVCRSWREITKEIVKTPELSGKLTFPISLKQPGPRGSLLQCYIKRNRSNQTYHLYLGLNQASTDDGKFLLAARKCRRPTCTDYIISLNADDVSKGSTTYIGKLRSNFLGTKFTVYDAQPPNAGARISKSRSTRRLGSRQVSPRVPAGNYPVAHISYELNVLGSRGPRRMQCVMDAIPANAIEPGGVAPTQTEFMKCWF* | 229 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2323719 | 2329153 | + | Vvi7g215 | Vvi7g215 | 789081 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi7g215 | 228 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 3-RELATED | 1 | 225 | - | - | |
Vvi7g215 | 228 | Pfam | Tub family | 59 | 222 | IPR000007 | - | |
Vvi7g215 | 228 | PRINTS | Tubby superfamily signature | 113 | 129 | IPR000007 | - | |
Vvi7g215 | 228 | PRINTS | Tubby superfamily signature | 129 | 153 | IPR000007 | - | |
Vvi7g215 | 228 | PRINTS | Tubby superfamily signature | 178 | 205 | IPR000007 | - | |
Vvi7g215 | 228 | Pfam | F-box domain | 1 | 45 | IPR001810 | GO:0005515 | |
Vvi7g215 | 228 | Gene3D | Tubby Protein; Chain A | 58 | 227 | IPR025659 | - | |
Vvi7g215 | 228 | SUPERFAMILY | Tubby C-terminal domain-like | 47 | 224 | IPR025659 | - | |
Vvi7g215 | 228 | PANTHER | TUBBY-RELATED | 1 | 225 | - | - |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15017 | PF01167 | Tub | 5.40E-58 | CL0395 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi7g215 | K19600 | - | vvi:100244335 | 455.292 |