Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g215 ATGCCTCCTGAATTGCTGAGAGACGTGTTAATGAGGATAGAAGCATCTGAGAGTACTTGGCCTCCTCGGAAAAATGTGGTTGCTTGTGCTGGTGTGTGCAGAAGTTGGAGAGAAATCACTAAGGAAATTGTGAAAACCCCAGAACTGTCGGGCAAGTTGACGTTCCCCATCTCTTTGAAGCAGCCTGGGCCAAGGGGCTCCCTCCTTCAGTGTTATATAAAGCGGAATCGTAGCAACCAAACATATCATCTCTATCTCGGCTTAAATCAAGCTTCAACTGATGATGGAAAGTTTCTTCTTGCTGCACGGAAGTGTAGACGTCCTACTTGCACAGACTATATCATCTCTCTTAATGCTGATGATGTTTCCAAGGGGAGCACCACTTATATTGGAAAGTTGAGGTCAAATTTTCTGGGAACCAAGTTCACTGTCTATGATGCGCAGCCTCCAAATGCAGGAGCAAGGATTAGTAAATCTCGTTCAACCAGGCGACTGGGTTCAAGACAAGTCTCCCCTAGAGTCCCTGCTGGCAACTATCCTGTAGCCCACATTTCATATGAATTGAATGTCTTGGGTTCCAGGGGTCCAAGGAGAATGCAGTGTGTCATGGATGCCATCCCTGCCAATGCCATTGAGCCAGGAGGAGTGGCCCCCACCCAAACTGAATTTATGAAATGCTGGTTTTGA 687 46.87 MPPELLRDVLMRIEASESTWPPRKNVVACAGVCRSWREITKEIVKTPELSGKLTFPISLKQPGPRGSLLQCYIKRNRSNQTYHLYLGLNQASTDDGKFLLAARKCRRPTCTDYIISLNADDVSKGSTTYIGKLRSNFLGTKFTVYDAQPPNAGARISKSRSTRRLGSRQVSPRVPAGNYPVAHISYELNVLGSRGPRRMQCVMDAIPANAIEPGGVAPTQTEFMKCWF* 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2323719 2329153 + Vvi7g215 Vvi7g215 789081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g215 228 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 1 225 - -
Vvi7g215 228 Pfam Tub family 59 222 IPR000007 -
Vvi7g215 228 PRINTS Tubby superfamily signature 113 129 IPR000007 -
Vvi7g215 228 PRINTS Tubby superfamily signature 129 153 IPR000007 -
Vvi7g215 228 PRINTS Tubby superfamily signature 178 205 IPR000007 -
Vvi7g215 228 Pfam F-box domain 1 45 IPR001810 GO:0005515
Vvi7g215 228 Gene3D Tubby Protein; Chain A 58 227 IPR025659 -
Vvi7g215 228 SUPERFAMILY Tubby C-terminal domain-like 47 224 IPR025659 -
Vvi7g215 228 PANTHER TUBBY-RELATED 1 225 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g364 Vvi7g215 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15017 PF01167 Tub 5.40E-58 CL0395 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g215 K19600 - vvi:100244335 455.292