Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g241 ATGGCAACAAACAGATTTGTATGTGAGATATGCAACAAGGGGTTCCAAAGGGACCAAAACCTTCAGTTGCATCGGAGAGGTCATAATCTGCCATGGAAGCTGAGGCAAAGAACAACCAACGAGATCAGGAAAAGAGTCTACATATGCCCCGAGCCATCGTGTGTCCACCACAACCCGGCTCGAGCGCTAGGAGATCTTACAGGAATCAAGAAGCATTACAGCAGGAAGCATGGAGAGAAAAAATGGAAATGTGACAAGTGCTCCAAGAAGTATGCCGTTCAATCCGACTGGAAGGCTCATTCAAAGACCTGTGGTACTAGGGAATACAAATGTGACTGTGGTACCATCTTCTCCAGAAGAGACAGCTTTATCACCCACAGGGCTTTCTGTGATGCATTGGCTGAAGAAAACAACAAAGTAAACCAGGGACTAATGGCTAACATGGGATCAAACTTACAAAGCCAAATGCCTGAGCTCATCTCTAACAGCTCATCCGGCTTCAACTACCTCCAAGACGGTAAAAATGGCACTCAACTATCAGGTTCAGCCAACATGTCCGCCACCGCCTTGCTGCAGAAAGCAGCCCAGATGGGTGCAACTGCAAGCAACAGTATCAACTCCCCCATGATGCAGAAGAGCTTTGTTAGTAGCATGGCAGCACCAGAGCTCTCTTCGATTCGACCATCCCCTTATGTCACAATTCAGCAGCAAACCAACTCATATGATCATCACTTCCAATCTCAGCCTGATCAATCACCTCTAGTTGGGATTAATGGTGGAGGCCTCCCGAGCCAGTTCTTGCAAAAGGGCCCCCCAGAAATCACACCATTGTTTCAAACTGTTTCCGGATCGGCATCAATGAACAATGATATTGGCATGTTTGGTAATGTGTTCATAGGTGGTGATCAAAACTCTCCATTCTTGAAGAACATGGAAAATGAGGATAGTAGTAGTACTTCTAGCCTTGCACAGGGAAGAACAGTGATGGCCCGGAGTGCCACAGGCCCATCAAGGTTCGGAGGGAATGGTGAAGGCAAAGATGTGACAACGCTCGATTTATTGGGGGTTGGAGGATCTAGGCCAGTGAATTTACAAGAGCAGCAGCAGAGGCTGGAGTTGGAGGCAATGAGTCAGCACAGAATGCAAGCGATGACTACTTTCCAGCAACAGCTCTCACATGGGGAACCAGCTATTGAACAAGGCCTATATGGGATTTATGACCCTATATTTCCAACCCAAGTGGTTCTTACTCATCATGATCTAATGAGGTAG 1272 47.09 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTNEIRKRVYICPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKVNQGLMANMGSNLQSQMPELISNSSSGFNYLQDGKNGTQLSGSANMSATALLQKAAQMGATASNSINSPMMQKSFVSSMAAPELSSIRPSPYVTIQQQTNSYDHHFQSQPDQSPLVGINGGGLPSQFLQKGPPEITPLFQTVSGSASMNNDIGMFGNVFIGGDQNSPFLKNMENEDSSSTSSLAQGRTVMARSATGPSRFGGNGEGKDVTTLDLLGVGGSRPVNLQEQQQRLELEAMSQHRMQAMTTFQQQLSHGEPAIEQGLYGIYDPIFPTQVVLTHHDLMR* 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2619325 2622316 - Vvi7g241 Vvi7g241 789107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g241 423 Gene3D Classic Zinc Finger 61 140 - -
Vvi7g241 423 MobiDBLite consensus disorder prediction 312 331 - -
Vvi7g241 423 MobiDBLite consensus disorder prediction 312 346 - -
Vvi7g241 423 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 157 389 - -
Vvi7g241 423 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 157 - -
Vvi7g241 423 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
Vvi7g241 423 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Vvi7g241 423 SMART c2h2final6 47 77 IPR013087 -
Vvi7g241 423 SMART c2h2final6 82 102 IPR013087 -
Vvi7g241 423 SMART c2h2final6 6 28 IPR013087 -
Vvi7g241 423 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Vvi7g241 423 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 157 - -
Vvi7g241 423 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 157 389 - -
Vvi7g241 423 Gene3D Classic Zinc Finger 6 51 - -
Vvi7g241 423 Pfam Zinc finger, C2H2 type 6 28 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g241 Vvi14g205 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15021 PF00096 zf-C2H2 0.0041 CL0361 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g241 - - oeu:111412403 504.212