Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g243 ATGAAGCAGATCCTGCCACCTAATGCAAAAATCTCCAAGGAAGCAAAAGAAACCATGCAAGAATGTGTCTCGGAGTTCATTAGCTTTGTGACTGGAGAAGCATCTGACAAGTGTCACAAGGAGAAGCGCAAGACTGTCAATGGGGACGACATTTGTTGGGCTTTGGGAACTTTAGGGTTTGATGACTATGCTGAACCGCTTAAAAGGTATTTGCATAGATATAGGGAGTTAGAAGGTGAGAAAGCTAACCAGAGTAAGGCTAGTGAAGAAAATGATGAACCTTCAAATTATAGAGGTGAACCACCAATGAAGCATACAGTTTCACCTGCTCCACTGAAGTTCAATGTGCTTGAGAGGAGTAATAGCTCTCTTTCCAAGCGACTTTAG 387 42.64 MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALGTLGFDDYAEPLKRYLHRYRELEGEKANQSKASEENDEPSNYRGEPPMKHTVSPAPLKFNVLERSNSSLSKRL* 129
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2646361 2646748 + Vvi7g243 Vvi7g243 789109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g243 128 Coils Coil 67 87 - -
Vvi7g243 128 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 55 IPR003958 -
Vvi7g243 128 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 114 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vvi7g243 128 MobiDBLite consensus disorder prediction 79 99 - -
Vvi7g243 128 SUPERFAMILY Histone-fold 1 97 IPR009072 GO:0046982
Vvi7g243 128 Gene3D Histone, subunit A 1 105 IPR009072 GO:0046982
Vvi7g243 128 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 1 114 - -
Vvi7g243 128 MobiDBLite consensus disorder prediction 79 128 - -
Vvi7g243 128 PRINTS CCAAT-binding transcription factor subunit A signature 19 37 - -
Vvi7g243 128 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Vvi7g243 128 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Vvi7g243 128 ProSitePatterns NF-YB/HAP3 subunit signature. 22 38 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g243 Vvi14g217 ECH
Vvi5g310 Vvi7g243 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15022 PF00808 CBFD_NFYB_HMF 4.50E-21 CL0012 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g243 K08065 - vvi:104879763 264.618