Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g253 ATGAAGGGTACCCTAGCAAGGCATTTGACGGTTCAGCTAGGTCAAGTTTCTCGCTGCCAGAACCTTCTGGAATCGGAATCCACCGTCGATAACATCGACGCTGATGTCGACGACAAAGATTTCATTCTCAGCCAAGACTTCTTCTGCACTCCTGACTACATCACTCCTGATGGTCAAAATATTTTGAATGGTCTGGATTGCAACAAGGATAACATCCCGTGCCCCAAGTCTCCGGAGAAGCTAAAGACTTCAAGAATCAAAAGGAAGAGAGAGGATGATACCTTATTAGATTCTCCCAATTCCACCTTGTTTGATCAACCAATATTGGAGCTAGAAAAAGACACTTTTGGTACGGATGAAGTTAAGGTGGAGAAAGCAATAGTAACTGGATCACAAAAGAATCAAAGTTATGTTTCACAATCTGCAGTTGCCTTACGGTGTCGGGTTATGCCCCCTCCTTGCTTAAAGAACCCATATCTGAAGAATGCTTCTGAAACTGACATAGATCCTTTTGGAAATCGAAGATCAAAATATTCAGGTTTTTTCCCTGCACTTATTGGTGGAGATGGCCTTTCCCGATATCACACAGATTTCCATGAGATTGAGCAAATTGGTGATGGGAACTTCAGTCGTGTTTTCAAGGTTCTGAAGAGAATTGATGGTTGCATGTATGCAGTGAAACATAGCACAAGACCATTGCATCAAGACACAGAAAGGAGGAAAGCTTTGATGGAAGTTCAAGCTTTGGCAGTTTTAGGATCTCATGAAAACATTGTAGGTTACTACACTTCATGGTTTGAAAATGAGAAACTCTATATTCAAATGGAGCTTTGTGATCACAGCTTATCCATCAAGAGATCTTCCCACTTGTTCACAGAAGGGGAAGTCCTGGAAGCTATGCATCAGATTGCCAAGGCCTTGCAATTTACACATGAGAAAGGAATAGCTCACCTAGATGTAAAACCTGATAACATTTATGTCAAAGATGGTGTTTACAAACTTGGTGATTTTGGTTGTGCAACACTTCTTGATAGAAGCCTTCCTATTGATGAAGGTGATGCGCGTTATATGCCACAAGAAATCTTGAATGACAACTACGACCATCTTGACAAGGTTGACATGTTCTCCTTGGGAGCTGCTATCTATGAACTTATTAGAGGCTCACACTTGCCTGAATCAGGATATCAGTTTTTGAATCTTAGAGAGGGAAAACTGCCACTTCTTCCTGGCTATTCTTTGCAATTCCAGAACTTACTCAAGGCAATGCTGGATCCAGATCCAGTTCAGCGGCCTTCAGCTAAAGAACTAGTAGAAAATCCAATTTTTGACAGGCTCCAAAGAAATGCCAAAACCAAGTAA 1359 41.43 MKGTLARHLTVQLGQVSRCQNLLESESTVDNIDADVDDKDFILSQDFFCTPDYITPDGQNILNGLDCNKDNIPCPKSPEKLKTSRIKRKREDDTLLDSPNSTLFDQPILELEKDTFGTDEVKVEKAIVTGSQKNQSYVSQSAVALRCRVMPPPCLKNPYLKNASETDIDPFGNRRSKYSGFFPALIGGDGLSRYHTDFHEIEQIGDGNFSRVFKVLKRIDGCMYAVKHSTRPLHQDTERRKALMEVQALAVLGSHENIVGYYTSWFENEKLYIQMELCDHSLSIKRSSHLFTEGEVLEAMHQIAKALQFTHEKGIAHLDVKPDNIYVKDGVYKLGDFGCATLLDRSLPIDEGDARYMPQEILNDNYDHLDKVDMFSLGAAIYELIRGSHLPESGYQFLNLREGKLPLLPGYSLQFQNLLKAMLDPDPVQRPSAKELVENPIFDRLQRNAKTK* 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2742535 2747173 - Vvi7g253 Vvi7g253 789119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g253 452 SUPERFAMILY Protein kinase-like (PK-like) 191 445 IPR011009 -
Vvi7g253 452 SMART serkin_6 198 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g253 452 Gene3D Transferase(Phosphotransferase) domain 1 277 446 - -
Vvi7g253 452 ProSitePatterns Protein kinases ATP-binding region signature. 204 227 IPR017441 GO:0005524
Vvi7g253 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 315 327 IPR008271 GO:0004672|GO:0006468
Vvi7g253 452 Gene3D Phosphorylase Kinase; domain 1 189 276 - -
Vvi7g253 452 PANTHER BNAA08G27310D PROTEIN 369 446 - -
Vvi7g253 452 PANTHER BNAA08G27310D PROTEIN 1 356 - -
Vvi7g253 452 ProSiteProfiles Protein kinase domain profile. 198 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g253 452 Pfam Protein kinase domain 198 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g253 452 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 369 446 - -
Vvi7g253 452 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 1 356 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76750 PF00069 Pkinase 4.80E-49 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g253 K06632 - vvi:100247725 907.516