Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g29 ATGTCGAATCAGGTGGTGAAGGTGAGGAGAGAGACGATTGCGGCATGCATGACATGTCCTCTCTGCAACAAGCTCTTGAGGGATGCTACCACCATTTCTGAATGTCTCCATACGTTTTGCAGAAAATGCATATATAACAAGATATCGGATGAGGAACTAGAATGCTGTCCAATATGCAACACAGATCTGGGTTGTGTTCCACTGGAGAAACTGAGGCCAGACCACAATTTGCAAGATGTAAGGGCCAAGATTTTCCCTTTCAAAAGAAGAAAGGTGAAGGCACCTGAAGTTGTGCTTCCAGTTACATTACCTGTTAAAAGAAAGGAGAGATCACTCTCATCCTTGGTGGTCAGCACCCCCAGAGTATCAACACAGACTACAATGACTGGAAGAAGAACAAAGTCTGTTGCAAGAAAGGCTACTGCTTTAAGAGGTTCCGGTTTTTCAATTGAGAAGCTCATTAAAAAGGAGGAAGACTCAGTGGGAGAGCGTCCAGCGAGCTCAAGCTCACCTGAGACTCTAAATAAATTCACTCAGAACATAAGGCAGAATTCACCCTCAGCAGAGCCATCTATCCACTCCACACCCAATAAAGAAACAGAGAATGGTGCTGAATCATGGGAAGGGAAATTTGATCTCTGGAAACCTTTAAATTGTTTGGTGGAAGTTGCAAATAGGACTAAGTCTCTTAAGTTTAACTCACAAGGGTCTGCTGTTAAATCGGAACCTATGCATGTTCCTGATGGTGAATCGCAAGTGCGCAAAACCAAAGTTAAGGAACATGGACGTAAATCTAAAGTTCAAGATGAAAAAATAAGCACCACTCCTGTCTCTGCAGAGTCAGTTAAACCTAAAAAGTTGTGCAGGGTTCGCCGAAGAAGGGCAGCCGCTTTTGGGGAGCTAGGCATTTCACCCCAAGCTGTGCTAAATGCTGTCAATAACCATAAAAGAAGAACTGGGTCAATTTGGTTCTCTTTAGTAGCTTCTGAAGACCAGGAAGGGGATGCATCATTGCCACAGATATCTTCGAATTTCTTAAGAATAAAGGATGTGAATGTACCTGTATCTTTTATCCAAAAGTACCTGATGAGGAAACTAGATCTTACTAGTGAAACTGAGGTTGAGATCAAATGCATGGGTCAACCAGTCCTCCCTACATTGCAGCTGCATAATTTAGTTGATTTATGGCTACAAACAGCATCAACATCACAAAGGGTACCGGCATCGATCGGCTCCTCCGGCAAGGAGTTCGTGATGGTGCTGGCTTATGCTCGAAGGCTCCTAGACCCCTAA 1293 43.77 MSNQVVKVRRETIAACMTCPLCNKLLRDATTISECLHTFCRKCIYNKISDEELECCPICNTDLGCVPLEKLRPDHNLQDVRAKIFPFKRRKVKAPEVVLPVTLPVKRKERSLSSLVVSTPRVSTQTTMTGRRTKSVARKATALRGSGFSIEKLIKKEEDSVGERPASSSSPETLNKFTQNIRQNSPSAEPSIHSTPNKETENGAESWEGKFDLWKPLNCLVEVANRTKSLKFNSQGSAVKSEPMHVPDGESQVRKTKVKEHGRKSKVQDEKISTTPVSAESVKPKKLCRVRRRRAAAFGELGISPQAVLNAVNNHKRRTGSIWFSLVASEDQEGDASLPQISSNFLRIKDVNVPVSFIQKYLMRKLDLTSETEVEIKCMGQPVLPTLQLHNLVDLWLQTASTSQRVPASIGSSGKEFVMVLAYARRLLDP* 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 344186 358022 + Vvi7g29 Vvi7g29 788895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g29 430 MobiDBLite consensus disorder prediction 164 202 - -
Vvi7g29 430 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Vvi7g29 430 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Vvi7g29 430 MobiDBLite consensus disorder prediction 116 137 - -
Vvi7g29 430 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Vvi7g29 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 111 IPR013083 -
Vvi7g29 430 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 427 IPR044807 GO:0004842
Vvi7g29 430 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP2-LIKE 1 427 - -
Vvi7g29 430 SUPERFAMILY RING/U-box 14 83 - -
Vvi7g29 430 MobiDBLite consensus disorder prediction 154 205 - -
Vvi7g29 430 MobiDBLite consensus disorder prediction 247 270 - -
Vvi7g29 430 SMART ring_2 19 59 IPR001841 -
Vvi7g29 430 MobiDBLite consensus disorder prediction 116 134 - -
Vvi7g29 430 MobiDBLite consensus disorder prediction 234 278 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g608 Vvi7g29 ECH
Vvi7g29 Vvi14g518 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g29 K16277 - vvi:100264728 854.358