Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi7g29 | ATGTCGAATCAGGTGGTGAAGGTGAGGAGAGAGACGATTGCGGCATGCATGACATGTCCTCTCTGCAACAAGCTCTTGAGGGATGCTACCACCATTTCTGAATGTCTCCATACGTTTTGCAGAAAATGCATATATAACAAGATATCGGATGAGGAACTAGAATGCTGTCCAATATGCAACACAGATCTGGGTTGTGTTCCACTGGAGAAACTGAGGCCAGACCACAATTTGCAAGATGTAAGGGCCAAGATTTTCCCTTTCAAAAGAAGAAAGGTGAAGGCACCTGAAGTTGTGCTTCCAGTTACATTACCTGTTAAAAGAAAGGAGAGATCACTCTCATCCTTGGTGGTCAGCACCCCCAGAGTATCAACACAGACTACAATGACTGGAAGAAGAACAAAGTCTGTTGCAAGAAAGGCTACTGCTTTAAGAGGTTCCGGTTTTTCAATTGAGAAGCTCATTAAAAAGGAGGAAGACTCAGTGGGAGAGCGTCCAGCGAGCTCAAGCTCACCTGAGACTCTAAATAAATTCACTCAGAACATAAGGCAGAATTCACCCTCAGCAGAGCCATCTATCCACTCCACACCCAATAAAGAAACAGAGAATGGTGCTGAATCATGGGAAGGGAAATTTGATCTCTGGAAACCTTTAAATTGTTTGGTGGAAGTTGCAAATAGGACTAAGTCTCTTAAGTTTAACTCACAAGGGTCTGCTGTTAAATCGGAACCTATGCATGTTCCTGATGGTGAATCGCAAGTGCGCAAAACCAAAGTTAAGGAACATGGACGTAAATCTAAAGTTCAAGATGAAAAAATAAGCACCACTCCTGTCTCTGCAGAGTCAGTTAAACCTAAAAAGTTGTGCAGGGTTCGCCGAAGAAGGGCAGCCGCTTTTGGGGAGCTAGGCATTTCACCCCAAGCTGTGCTAAATGCTGTCAATAACCATAAAAGAAGAACTGGGTCAATTTGGTTCTCTTTAGTAGCTTCTGAAGACCAGGAAGGGGATGCATCATTGCCACAGATATCTTCGAATTTCTTAAGAATAAAGGATGTGAATGTACCTGTATCTTTTATCCAAAAGTACCTGATGAGGAAACTAGATCTTACTAGTGAAACTGAGGTTGAGATCAAATGCATGGGTCAACCAGTCCTCCCTACATTGCAGCTGCATAATTTAGTTGATTTATGGCTACAAACAGCATCAACATCACAAAGGGTACCGGCATCGATCGGCTCCTCCGGCAAGGAGTTCGTGATGGTGCTGGCTTATGCTCGAAGGCTCCTAGACCCCTAA | 1293 | 43.77 | MSNQVVKVRRETIAACMTCPLCNKLLRDATTISECLHTFCRKCIYNKISDEELECCPICNTDLGCVPLEKLRPDHNLQDVRAKIFPFKRRKVKAPEVVLPVTLPVKRKERSLSSLVVSTPRVSTQTTMTGRRTKSVARKATALRGSGFSIEKLIKKEEDSVGERPASSSSPETLNKFTQNIRQNSPSAEPSIHSTPNKETENGAESWEGKFDLWKPLNCLVEVANRTKSLKFNSQGSAVKSEPMHVPDGESQVRKTKVKEHGRKSKVQDEKISTTPVSAESVKPKKLCRVRRRRAAAFGELGISPQAVLNAVNNHKRRTGSIWFSLVASEDQEGDASLPQISSNFLRIKDVNVPVSFIQKYLMRKLDLTSETEVEIKCMGQPVLPTLQLHNLVDLWLQTASTSQRVPASIGSSGKEFVMVLAYARRLLDP* | 431 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 344186 | 358022 | + | Vvi7g29 | Vvi7g29 | 788895 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi7g29 | 430 | MobiDBLite | consensus disorder prediction | 164 | 202 | - | - | |
Vvi7g29 | 430 | ProSiteProfiles | Zinc finger RING-type profile. | 19 | 60 | IPR001841 | - | |
Vvi7g29 | 430 | Pfam | Zinc finger, C3HC4 type (RING finger) | 19 | 59 | - | - | |
Vvi7g29 | 430 | MobiDBLite | consensus disorder prediction | 116 | 137 | - | - | |
Vvi7g29 | 430 | ProSitePatterns | Zinc finger RING-type signature. | 35 | 44 | IPR017907 | - | |
Vvi7g29 | 430 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 111 | IPR013083 | - | |
Vvi7g29 | 430 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE DRIP1 | 1 | 427 | IPR044807 | GO:0004842 | |
Vvi7g29 | 430 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE DRIP2-LIKE | 1 | 427 | - | - | |
Vvi7g29 | 430 | SUPERFAMILY | RING/U-box | 14 | 83 | - | - | |
Vvi7g29 | 430 | MobiDBLite | consensus disorder prediction | 154 | 205 | - | - | |
Vvi7g29 | 430 | MobiDBLite | consensus disorder prediction | 247 | 270 | - | - | |
Vvi7g29 | 430 | SMART | ring_2 | 19 | 59 | IPR001841 | - | |
Vvi7g29 | 430 | MobiDBLite | consensus disorder prediction | 116 | 134 | - | - | |
Vvi7g29 | 430 | MobiDBLite | consensus disorder prediction | 234 | 278 | - | - |
Event-related genes

Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi7g29 | K16277 | - | vvi:100264728 | 854.358 |