Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g32 ATGGTGGAAACTGGGGAGGCTGTGGTTAGGTTTAACAGAGTTGTTTCTCTTCTCAATACTGGTTTGGGCCATGCCAGGGTGAGAAAATCCAAAAATTTTCAAACCCCTCTCCCCCACAATATCCTCTTAGACAAGCCAAATGCCAAACAAGATCACCCATCCAAGACTTTTCAGTTTCTCCACTCCAGTTCTCTTGAAAAGCCAATTCAAGAAATGGGCCCTCTGCAACTTTCTCAACTCATACCATCGTCAACAAATTACCAGTTCCTCCACCACCAGCAACAGCAGAGGCTGCAGCAGCAGATGAAGCATCAGGCCGATACCATGTATCGGCGGAGCAATAGCGGTATCAATCTCAATTTTGATAGCTCCAGTTGTACACCAACAATGTCGTCCACCCGGTCTTTTATCTCATCCCTGAGCGTGGATGGAAGTGTGGCTAACTTGGATGGAAACGCCTTCCATTTGATTGGCCCGGCTCGATCCGATCAGAACTCCTTCCAACATAAGAGGAAGTGCTCAAGGGGAGAAGAGGGTAGTGTGAAATGCGGCAGCAGCGGCAGATGCCACTGCTCAAAGAAGAGGAAACATAGAGTGAAGAGGTCAATCAAGGTGCCGGCTATAAGTAACAAGCTTGCTGATATCCCTCCCGATGAGTACTCGTGGAGGAAGTACGGGCAGAAGCCGATAAAGGGTTCTCCTCACCCTAGGGGATACTATAAATGTAGCAGCATGAGAGGTTGCCCTGCAAGGAAGCATGTGGAGCGATGTTTGGAAGACCCTTCAATGCTTATAGTCACTTATGAAGGTGAGCATAACCACCCAAGGTTACCATCACAATCTGCAAACCAGTAA 855 47.95 MVETGEAVVRFNRVVSLLNTGLGHARVRKSKNFQTPLPHNILLDKPNAKQDHPSKTFQFLHSSSLEKPIQEMGPLQLSQLIPSSTNYQFLHHQQQQRLQQQMKHQADTMYRRSNSGINLNFDSSSCTPTMSSTRSFISSLSVDGSVANLDGNAFHLIGPARSDQNSFQHKRKCSRGEEGSVKCGSSGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIVTYEGEHNHPRLPSQSANQ* 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 381034 383836 + Vvi7g32 Vvi7g32 788898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g32 284 Pfam WRKY DNA -binding domain 218 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi7g32 284 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 1 63 - -
Vvi7g32 284 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 76 283 - -
Vvi7g32 284 Gene3D WRKY domain 205 277 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi7g32 284 ProSiteProfiles WRKY domain profile. 211 277 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi7g32 284 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 76 283 IPR044810 GO:0003700
Vvi7g32 284 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 63 IPR044810 GO:0003700
Vvi7g32 284 SMART WRKY_cls 216 276 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi7g32 284 Pfam Plant zinc cluster domain 170 214 IPR018872 -
Vvi7g32 284 SUPERFAMILY WRKY DNA-binding domain 214 276 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15023 PF03106 WRKY 8.10E-27 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g32 - - vvi:100257874 560.836