Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g324 ATGGATGATAACACAAGTGGAATTTCAAAGGGCCGTGCTCCGTCCAGCTATGCTCTTAGTGGAAAAGTTATGCTGAGTTCAGTTGTTATTCTCTTCACTGTTGTTGCTGTCATTGTTTTTTTCCATTCTTATGCCCGGTGGTTGCTCAGTCGTGACCGGACTAGACGTCACCTCCGCCGCCGTAGCCGTATCCGCTTTGACTCGGACCGCACCACCGCCGTATCCGCCGTCGACGGTGTCGTTGACCAGGGTCTCGACGTCTCCATCCTCAAGTCTCTTCCGACTTTTGTCTACTCAAAGGCCACTCACGGCCCAATTTTAGAATGCGCCGTCTGCTTATCGGAGTTTGAAGATGACGAGAAAGGCCGCGTTTTGCCGAAATGTAACCACTGCTTCCACAATGACTGCATCGACATGTGGTTCCACTCTCACTCCAATTGCCCACTCTGCAGAGCCCTTACGATCTCCGGAGCTTCTCCCCGGTGCCCAAGGGATGATGATGAAAACGAAACGGGTCCATCTTCTTCATTGACTCCGGGGACGTTGACGCTGTTGGAGTGCCCAAGGAAGCCACTGGAGCTGGTGGGTATAACGGTGGAGATGCCGGCCATGAGAGCAGGGGGGTGTAGAGGCTTGGAAGAGGTGGAGTTGGGAACAACGGAGAGCCAATCGTCGAAGTCGCCGGGAAGTCGGATCCTGTCGTTGAAGAGGATTTGGAGCACATAA 726 53.44 MDDNTSGISKGRAPSSYALSGKVMLSSVVILFTVVAVIVFFHSYARWLLSRDRTRRHLRRRSRIRFDSDRTTAVSAVDGVVDQGLDVSILKSLPTFVYSKATHGPILECAVCLSEFEDDEKGRVLPKCNHCFHNDCIDMWFHSHSNCPLCRALTISGASPRCPRDDDENETGPSSSLTPGTLTLLECPRKPLELVGITVEMPAMRAGGCRGLEEVELGTTESQSSKSPGSRILSLKRIWST* 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3351618 3352410 + Vvi7g324 Vvi7g324 789190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g324 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 155 IPR013083 -
Vvi7g324 241 MobiDBLite consensus disorder prediction 161 180 - -
Vvi7g324 241 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 9 203 - -
Vvi7g324 241 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Vvi7g324 241 Pfam Ring finger domain 108 151 IPR001841 -
Vvi7g324 241 SUPERFAMILY RING/U-box 89 155 - -
Vvi7g324 241 CDD RING-H2_EL5_like 108 151 - -
Vvi7g324 241 PANTHER RING-H2 FINGER PROTEIN ATL64 9 203 - -
Vvi7g324 241 SMART ring_2 109 150 IPR001841 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g324 - - vvi:100855330 437.573