Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g348 ATGCCTGCAGAATCTCATGCTCCTAGCCCCAGGGGCCTCCTCTGTAATGCTGGCGCAGGCGCTGCGGCCGGAGTCATTGCGGCTACGTTTGTGTGCCCTTTAGATGTTATTAAGACGAGGTTTCAGGTTCATGGGCTGCCTCAGCTGGGTAATGGAAACATTAAAGGTAGTCTCATTGTTGGGAGTTTGGAACAAATATTTCAGAAGGAGGGATTGCGAGGCATGTATCGTGGGCTTTCTCCCACAGTCCTAGCATTGCTTCCAAACTGGGCAGTGTATTTTACAATCTATGAGCAGCTCAAGAGCTTTCTTTGTTCCAATGATGAGAATCATCAACTTTCAATTGGTGCCAACATGATAGCTGCCTGTGGTGCTGGGGCTGCAACAACCATTGCTACAAATCCCCTTTGGGTTGTGAAGACCAGACTTCAAACTCAAGGAATGAGAGCAGGTGTTGTACCATATAGCAGTACTCTTTCAGCTTTGAGGAGAATTGCTTATGAGGAGGGTATTCGTGGATTATACAGTGGGCTTGTGCCGGCATTGGCTGGTATCAGTCATGTGGCCATCCAATTCCCAACATATGAAAAAATCAAAATGTATTTGGCAAGTCGAGAAAACACTACAATGGATAAACTCGGTGCTCCTGATGTTGCTGTTGCCTCATCTGTCTCCAAAATATTTGCATCTACACTGACATATCCACATGAGGTGGTACGATCAAGGCTTCAAGAACAAGGGCATCACTCAGAAAAGCGTTACTCCGGTGTAGTTGACTGCATTAAAAAGGTATTGCAGCAAGAAGGCCTTGCTGGTTTTTACCGTGGGTGTGCCACCAACCTCTTGAGGACTACCCCAGCTGCTGTAATCACATTCACCAGTTTTGAAATGATTCACCGGTTTCTTGTCAATCTACTCCCTCCTGATCCGCATCCTCACACATTGTGA 948 46.52 MPAESHAPSPRGLLCNAGAGAAAGVIAATFVCPLDVIKTRFQVHGLPQLGNGNIKGSLIVGSLEQIFQKEGLRGMYRGLSPTVLALLPNWAVYFTIYEQLKSFLCSNDENHQLSIGANMIAACGAGAATTIATNPLWVVKTRLQTQGMRAGVVPYSSTLSALRRIAYEEGIRGLYSGLVPALAGISHVAIQFPTYEKIKMYLASRENTTMDKLGAPDVAVASSVSKIFASTLTYPHEVVRSRLQEQGHHSEKRYSGVVDCIKKVLQQEGLAGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVNLLPPDPHPHTL* 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3538631 3549120 - Vvi7g348 Vvi7g348 789214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g348 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 113 201 IPR018108 -
Vvi7g348 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 103 IPR018108 -
Vvi7g348 315 Pfam Mitochondrial carrier protein 112 203 IPR018108 -
Vvi7g348 315 Pfam Mitochondrial carrier protein 14 106 IPR018108 -
Vvi7g348 315 Pfam Mitochondrial carrier protein 217 303 IPR018108 -
Vvi7g348 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 213 301 IPR018108 -
Vvi7g348 315 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 1 314 IPR044712 GO:0006862|GO:0055085
Vvi7g348 315 PRINTS Mitochondrial carrier protein signature 16 29 IPR002067 GO:0055085
Vvi7g348 315 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085
Vvi7g348 315 PRINTS Mitochondrial carrier protein signature 78 98 IPR002067 GO:0055085
Vvi7g348 315 PRINTS Mitochondrial carrier protein signature 128 146 IPR002067 GO:0055085
Vvi7g348 315 PRINTS Mitochondrial carrier protein signature 222 244 IPR002067 GO:0055085
Vvi7g348 315 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 1 314 - -
Vvi7g348 315 SUPERFAMILY Mitochondrial carrier 13 297 IPR023395 -
Vvi7g348 315 Gene3D Mitochondrial carrier domain 110 305 IPR023395 -
Vvi7g348 315 Gene3D Mitochondrial carrier domain 2 109 IPR023395 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g348 K15115 - vvi:100258843 571.237