Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g353 ATGGCCACGATGAATCGAACCGTAGTGTTCAGAAAGCACAGAGATGCTGTGAACAGCGTTCGAGCTCCGGCGGGGGTCAGCTCCGGCGGTGCCGTGATCGAAATGGCGAGTACTTCGCTTTTTCACTCGAATCGGTCTTCGTATACTCCTCTTAGCACTGAGGATCCAGGTCCTTCTAGTAAGGATGCATTTACAGTGGGTCTACCTCCAGCTTGGGTAGATGTTTCTGAAGAAGTAGCTGCAAATATACAACGTTCTAGGGTAAAAATGGCTGAGTTAGTCAAGGCTCAGGCCAAAGCTTTAATGCCCTCCTTTGAAGATGGCAAAGAAGATCAACGTAAGATTGAGTCTCTCACCCAAGAAATTACAGATCTACTGAAGAGGTCAGAAAAGAGATTACAAAAACTTTCTGCAAGGGGGCCTTCTGAGGATTCTAATGTTAGGAAAAATGTACAGCGTTCTCTTGCTACAGACCTTCAGAACCTCTCATTGGAGCTCAGAAAGAGACAGTCAACATATTTGAAGCGTTTGAGGCAGCAAAAAGAGGGACATGACGGGGTTGACTTGGAGATGAACTTGAATGAAAATAAATTCAGATTGGATGATGATGAGTTTGGTGACATGGGTTTTAATGAGCATCAAATGGCCAAGCTAAAGAAGAGTGAGAAATTCACAGCTGAAAGGGAGAAAGAGATCAGACAGGTGGTGGAATCTGTGAATGAGCTTGCTCAAATCATGAAAGATCTCTCAGTCCTTGTGATAGACCAGGGAACAATTGTTGATCGGATAGACTACAACATTCAGAGTGTGTCTGCATCAGTTGAGGAGGGCTTTAAACAGCTTGAAAAGGCAGAAAGAACACAGAGGAAAGGTGGAATGGTAACATGTGCAACGATTCTCGTTATCATGTGTTTCATCATGCTAGTCCTCCTAATCTTGAAGGAGATTTTCTTGTGA 957 43.99 MATMNRTVVFRKHRDAVNSVRAPAGVSSGGAVIEMASTSLFHSNRSSYTPLSTEDPGPSSKDAFTVGLPPAWVDVSEEVAANIQRSRVKMAELVKAQAKALMPSFEDGKEDQRKIESLTQEITDLLKRSEKRLQKLSARGPSEDSNVRKNVQRSLATDLQNLSLELRKRQSTYLKRLRQQKEGHDGVDLEMNLNENKFRLDDDEFGDMGFNEHQMAKLKKSEKFTAEREKEIRQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQSVSASVEEGFKQLEKAERTQRKGGMVTCATILVIMCFIMLVLLILKEIFL* 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3575836 3579746 + Vvi7g353 Vvi7g353 789219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g353 318 PANTHER SYNTAXIN-43 1 313 - -
Vvi7g353 318 CDD SNARE_syntaxin16 226 283 - -
Vvi7g353 318 PANTHER SYNTAXIN 1 313 IPR045242 -
Vvi7g353 318 Coils Coil 108 139 - -
Vvi7g353 318 SMART SynN_4 63 178 IPR006011 GO:0016020
Vvi7g353 318 Pfam SNARE domain 258 310 IPR000727 -
Vvi7g353 318 SUPERFAMILY t-snare proteins 68 277 IPR010989 GO:0016020|GO:0016192
Vvi7g353 318 ProSitePatterns Syntaxin / epimorphin family signature. 228 267 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vvi7g353 318 Gene3D - 69 276 - -
Vvi7g353 318 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 222 284 IPR000727 -
Vvi7g353 318 SMART tSNARE_6 217 284 IPR000727 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g353 Vvi14g133 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g353 K08489 - vvi:100248594 610.912