Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g376 ATGAAGTTGAAAAACTCCATTGAAATCGAAAAGGAGAACAAGCCAATAGGTGATGGAGATAGAAATACGAGTCAGAGAAAACAGCAAACTGGGAAATCAGCTATTGCGTCGAATAGGGCACCAGTAACGACTACTAAGAATTTTGCTAAGATTGATGCTGACTTGACGCCAGTAGAAAAGGCTTCCAACATATTGAAAACTGAGCCTGCATGGTTTATTCTGAGTGGGCATAAACTACAAAGAAAGGAGTTTCAGCAAGTTATTAAACGTTTAAAAGGAAGATCTTGCAGAGACTCTCATCACTGGTCATACCAGGCAACACACTTCATTGTTCCAGATCCAATCCGCAGGACAGAGAAGTTCTTTGCTGCTGCAGCTGCTGGGAGGTGGATCCTTAAGACAGATTATTTAACTGCTAGCAGTCAAGCAGGAAAATTCCTGGCGGAGGAGCCTTATGAATGGCACAAAAATGGCCTTAGTGAAGATGGTGCAATCAATTTAGAGGCTCCTAGGAAGTGGCGCCTCTTAAGGGAGCGGACAGGTCATGGTGCCTTCTATGGAATGCGCATTATAATTTATGGAGAATGCATTGCACCCCCTTTGGACACTCTGAAGCGTGTTGTGAAGGCAGGAGATGGGACCATATTAGCTACTTCTCCACCTTATACTCGATTCCTAAAATCAGGAGTTGATTTTGCCATTGTCAGCCCTGGAATGCCACGTGTTGATTTGTGGGTGCAGGAGTTCCTGAGACATGAGATACCCTGTGTCGTTCCTGATTATTTGGTCGAATATGTGTGCAAACCTGGATACTCTCTTGAGAGACATGTGCAATACAATACTCATGCTTGGGCAGAAAAATCATTTGCTAACCTGATAAACCGGTCAGAAGAGATTGTGGAGGACCTGGCTAATCTCACACCACCAGATAATCAAGACATTAATGATCTAAATTGTGAAGTTTGTGGATCTCATGAAAGAGGAGAAGTGATGCTGATTTGTGGTAATGAAAGCGGTTCTATTGGGTGCGGGGTTGGTACCCACATTGATTGCTGTGATCCTCCACTGACAGAGGTTCCAGAGGAGGATTGGTTCTGTCCAAAATGTCGTGGAAGCATAAATAGAATCAACCCACCTAAGAGAACCAAAAAAGGCAACTCTTTGAAGAAGTGA 1173 43.65 MKLKNSIEIEKENKPIGDGDRNTSQRKQQTGKSAIASNRAPVTTTKNFAKIDADLTPVEKASNILKTEPAWFILSGHKLQRKEFQQVIKRLKGRSCRDSHHWSYQATHFIVPDPIRRTEKFFAAAAAGRWILKTDYLTASSQAGKFLAEEPYEWHKNGLSEDGAINLEAPRKWRLLRERTGHGAFYGMRIIIYGECIAPPLDTLKRVVKAGDGTILATSPPYTRFLKSGVDFAIVSPGMPRVDLWVQEFLRHEIPCVVPDYLVEYVCKPGYSLERHVQYNTHAWAEKSFANLINRSEEIVEDLANLTPPDNQDINDLNCEVCGSHERGEVMLICGNESGSIGCGVGTHIDCCDPPLTEVPEEDWFCPKCRGSINRINPPKRTKKGNSLKK* 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3826589 3828197 + Vvi7g376 Vvi7g376 789242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g376 390 SMART BRCT_7 62 144 IPR001357 -
Vvi7g376 390 SMART BRCT_7 182 269 IPR001357 -
Vvi7g376 390 SMART PHD_3 318 370 IPR001965 -
Vvi7g376 390 MobiDBLite consensus disorder prediction 22 39 - -
Vvi7g376 390 ProSiteProfiles BRCT domain profile. 72 154 IPR001357 -
Vvi7g376 390 Pfam PHD-finger 319 370 IPR019787 -
Vvi7g376 390 Gene3D BRCT domain 181 282 IPR036420 -
Vvi7g376 390 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 3 369 IPR044254 -
Vvi7g376 390 CDD BRCT_TopBP1_rpt7 69 144 - -
Vvi7g376 390 Gene3D BRCT domain 66 180 IPR036420 -
Vvi7g376 390 Pfam BRCA1 C Terminus (BRCT) domain 78 139 IPR001357 -
Vvi7g376 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 306 388 IPR013083 -
Vvi7g376 390 MobiDBLite consensus disorder prediction 1 21 - -
Vvi7g376 390 SUPERFAMILY FYVE/PHD zinc finger 306 375 IPR011011 -
Vvi7g376 390 ProSiteProfiles Zinc finger PHD-type profile. 316 372 IPR019787 -
Vvi7g376 390 SUPERFAMILY BRCT domain 72 173 IPR036420 -
Vvi7g376 390 MobiDBLite consensus disorder prediction 1 39 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15027 PF00533 BRCT 1.00E-05 CL0459 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g376 K10728 - vvi:100257310 814.683