Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g390 ATGAAGGATCTCGACTTCGCCGGTGACAAGGCCTTCGCGAAGGATTTTCTCTCGAATTTCGCCGATGCGTTTGGCGAAGCCAAATACATAAAAATCTTTCAAGAAGTCGCCAACCGCAAAAGTCGCGCCATCCAGATCGAGCTTGAGGACCTATTTAATTACAAAGACGTGGACGAAGACTTTCTTAGGCGGGTCACTGAAAATACTCGGCGATATATTGGAATATTTGCTGACGCTATTGATGAGCTCATGCCGGAGCCCACAGAGGCCTTCCTAGACGATGATCATGATATTCTGATGACACAAAGGTCTGAGGAGGGAACGGAAAATGTAGATGGTGCTGATCCACGGCAGAAGATGCCTCCGGAGATTAAACGTTTCTATGAAGTTTATATCAGAGCATCTTCAAAGGAACGGCCATTTACAATCAGGGAGGTGAAAGCATCATATATTGGCCAGCTTGTCAGGATATCTGGCATTGTTACGCGGTGTTCGGATGTCAAGCCATTGATGCAGGTGGCAGTGTATACATGTGAAGATTGTGGGTTCGAAATTTACCAGGAAGTAACTGCTCGAGTCTTCATGCCCCTGTTTGAGTGTCCATCCACACGCTGCCAGACAAATAGGACAAAGGGGAACATCATCCTTCAACTCAGAGCCTCAAAGTTTTTGAAGTTTCAGGAGGCCAAGATTCAAGAGTTAGCTGAACATGTTCCAAAAGGCCATATTCCAAGGACAATGACTGTTCATCTCAGGGGAGAACTCACGAGAAAGGTTGCTCCTGGTGATGTTGTTGAATTATCAGGGATTTTTCTTCCCATTCCTTATACTGGATTCAGAGCAATGCGTGCTGGCTTAGTTGCAGATACATACTTAGAGGCCATGTCTGTAACCCATTTCAAGAAAAAATATGAGGAGTATGAACTTAGACGAGATGAGGAAGAACAAATTGCACGCTTAGCTGAGGATGGTGATATATATAATAAGTTGGCTCGATCATTAGCACCTGAAATTTTTGGACATGAAGATGTCAAGAAGGCTCTACTTCTTCTCCTTGTAGGCGCTCCTCACAGGAAGTTGAAAGATGGAATGAAGATAAGAGGAGATTTACATATTTGTTTGATGGGTGATCCTGGGGTTGCTAAAAGTCAACTTCTTAAGCATATAATCAATGTTGCACCTAGGGGAGTGTATACCACTGGCAGAGGAAGCAGTGGAGTTGGTCTAACTGCTGCTGTTCAGAAGGATCCTGTAACAAATGAAATGGTCCTGGAAGGGGGAGCACTGGTTCTTGCCGATATGGGCATATGTGCAATTGATGAGTTTGACAAGATGGAAGATTCAGATCGCACAGCAATTCATGAAGTAATGGAGCAGCAGACTGTTAGCATTGCCAAGGCTGGAATCACTACATCTCTGAATGCAAGAACTGCTGTTCTTGCTGCTGCCAATCCAGCCTGGGGAAGATATGACCTAAGGAGAACTCCTGCCGAAAATATTAATCTCCCTCCAGCTCTTCTATCAAGATTTGATCTTTTGTGGTTGATCCTCGATCGAGCAGATATGGACAGCGATCTTGAAATGGCTAGGCATGTTGTTTATGTCCACAAGAATAAAGAATCACCTGCTCTTGGGTTTACTCCACTTGAGCCATCTATTCTTCGGGCTTATATTTCAGCTGCCAGAAGAATTTCTCCCTGTGTTCCAAAGGAGCTAGAGGAGTATATTGCTAGTGCGTACTCTGGCATTCGGCAAGAAGAAGCCAAATCAAGTAGTCCCCATTCCTATACAACTGTGAGAACTCTGCTTAGCATTCTCCGGATATCAGCTGCACTAGCAAGACTTCGATTTTCAGAAACTGTGGCACAGAGTGATGTGGATGAAGCACTTAGGTTAATGCAAATGTCAAAATTCTCTTTGTACTCTGATGATCGCCAGAAATCTGGTCTTGATGCTATCTCTGATATCTATTCAATCTTGCGCGATGAAGCTGCAAGGAGTAACAGGATGGACTTGAGCTATGCCCATGCACTGAATTGGATTTCTAGAAAGGGTTACAGTGAAGCCCAGTTGAAAGAATGCTTGGAGGAATATGCAGCCTTGAATGTGTGGCAGATCCATCCCAACACCTTTGACATCCGATTCATTGATGCCTGA 2157 44.32 MKDLDFAGDKAFAKDFLSNFADAFGEAKYIKIFQEVANRKSRAIQIELEDLFNYKDVDEDFLRRVTENTRRYIGIFADAIDELMPEPTEAFLDDDHDILMTQRSEEGTENVDGADPRQKMPPEIKRFYEVYIRASSKERPFTIREVKASYIGQLVRISGIVTRCSDVKPLMQVAVYTCEDCGFEIYQEVTARVFMPLFECPSTRCQTNRTKGNIILQLRASKFLKFQEAKIQELAEHVPKGHIPRTMTVHLRGELTRKVAPGDVVELSGIFLPIPYTGFRAMRAGLVADTYLEAMSVTHFKKKYEEYELRRDEEEQIARLAEDGDIYNKLARSLAPEIFGHEDVKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMEDSDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHKNKESPALGFTPLEPSILRAYISAARRISPCVPKELEEYIASAYSGIRQEEAKSSSPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQKSGLDAISDIYSILRDEAARSNRMDLSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPNTFDIRFIDA* 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3956396 3963973 - Vvi7g390 Vvi7g390 789256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g390 718 Pfam MCM AAA-lid domain 553 636 IPR041562 -
Vvi7g390 718 ProSitePatterns MCM family signature. 435 443 IPR018525 GO:0003677|GO:0005524|GO:0006260
Vvi7g390 718 PANTHER DNA REPLICATION LICENSING FACTOR MCM7 36 696 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vvi7g390 718 Gene3D - 311 643 IPR027417 -
Vvi7g390 718 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 120 132 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vvi7g390 718 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 158 169 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vvi7g390 718 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 176 187 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vvi7g390 718 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 193 205 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vvi7g390 718 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 285 295 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vvi7g390 718 ProSiteProfiles MCM family domain profile. 326 532 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi7g390 718 PRINTS Mini-chromosome maintenance (MCM) protein family signature 367 382 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi7g390 718 PRINTS Mini-chromosome maintenance (MCM) protein family signature 427 441 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi7g390 718 PRINTS Mini-chromosome maintenance (MCM) protein family signature 455 468 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi7g390 718 PRINTS Mini-chromosome maintenance (MCM) protein family signature 479 491 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi7g390 718 PRINTS Mini-chromosome maintenance (MCM) protein family signature 506 514 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi7g390 718 Pfam MCM OB domain 143 273 IPR033762 -
Vvi7g390 718 Gene3D - 143 271 IPR012340 -
Vvi7g390 718 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 36 696 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vvi7g390 718 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 647 IPR027417 -
Vvi7g390 718 Pfam MCM P-loop domain 314 536 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi7g390 718 SUPERFAMILY Nucleic acid-binding proteins 14 294 IPR012340 -
Vvi7g390 718 SMART mcm 139 638 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vvi7g390 718 Coils Coil 297 317 - -
Vvi7g390 718 Pfam MCM N-terminal domain 14 132 IPR027925 -
Vvi7g390 718 Gene3D - 10 100 - -
Vvi7g390 718 Gene3D - 170 224 - -
Vvi7g390 718 SMART AAA_5 368 521 IPR003593 -
Vvi7g390 718 Coils Coil 713 718 - -
Vvi7g390 718 CDD MCM7 329 636 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g390 K02210 - vvi:100267599 1390.17